PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.3G149700.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

HB-other

Protein Properties

Length: 1848aa MW: 205543 Da PI: 5.3577

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.3G149700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.5	5.6e-19	50	104	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++qle+Le+ +++++yp++++r+eL+ +lgLt+rq ++WF+ rR k++k Sevir.3G149700.1.p 50 KRVMKTPYQLEVLERTYAEDSYPNETKRAELSVQLGLTDRQLQMWFCHRRLKDRK 104 79999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.64E-17	34	104	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.7E-17	35	104	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.422	45	105	IPR001356	Homeobox domain
SMART	SM00389	6.1E-17	47	109	IPR001356	Homeobox domain
CDD	cd00086	2.58E-14	50	105	No hit	No description
Pfam	PF00046	1.1E-16	50	104	IPR001356	Homeobox domain
SMART	SM00571	2.9E-18	610	669	IPR018501	DDT domain
PROSITE profile	PS50827	16.1	610	669	IPR018501	DDT domain
Pfam	PF02791	8.9E-16	612	666	IPR018501	DDT domain
Pfam	PF05066	1.7E-15	792	859	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	9.1E-9	1002	1044	IPR028942	WHIM1 domain
Pfam	PF15613	2.5E-13	1181	1252	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1848 aa Download sequence Send to blast
MESSGDGGDE GAGAAAVGMG SPGPASAPAA VGGGGSGAGA SGSGGKPPVK RVMKTPYQLE 60 VLERTYAEDS YPNETKRAEL SVQLGLTDRQ LQMWFCHRRL KDRKPPAKRQ QRDEEVTVPV 120 IAPPPVLPPP LPHSEIMVGT VGTYGEQLLP YSRRGPGRSS AVPRISVPEI GRRYYEPPQV 180 ILPHMAAVHL TQAEHRMIDS VETLIGEPLR DDGPVLGVEF DPLPPGAFGA PIVPEQPKQP 240 YRSYEPKMFS GRDPKPMKAS AFLPTIDPLL PNTVNGKRKS LVGSSSHLGS QAVHEYQFLP 300 EQPSDVYERA SQSRFYDTST EASNSRIASL STGSRFLHGV EQAPSYAFHG QLSGSSHLAQ 360 HGRSPIPSGS TDHEGALSNI NVSPAPFHGQ FGIPQVAGFE TPLASSERMG YHDEDTYRVD 420 RKRKHNEEAK IAKEVEAHEK RIRKELEKQD LLNRKREEQM RRETERHDRE RRKEEERLMR 480 ERQREEERFQ KEQRREHKRM EKFMQKQSIR AEKLRQKEEL RREKEAARQK AANEKATARR 540 IAREAMELME DERLELLELA YRSKGLPSMV SLDIDTLQQL DSFRGMLGQF PPETVRLKVP 600 FSTKPWAASE DNIGNLLMVW KFFITFADVL GLPSFTLDEF VQALHDYDSR FLGELHVALL 660 KSIIKDIEDV ARTPSVALGV NQSGSANPGG GHPQIVEGAY AWGFNILNWQ RHLNFLTWPE 720 ILRQFGLCAG FGPQLKKRNA GTVHYRDDNE GRDGADIIST LRNGSAAVNA AALMKERGYT 780 NRRRSRHRLT PGTVKFAAYH VLSLEGSKGL TILEVAEKIQ KSGLRDLTTS KTPEASISAA 840 LSRDTKLFER TAPSTYCVKT PYRKDPADSE TVLSAAREKI RVFQNALSEC EEVEKDVDEA 900 ERDADSECDD ADDDVDGDDM NIEDKDVKSP LVRAQDGAPV TVVGDIKQES NSVVNTLVPQ 960 STQTKCSESV SLRTLDIKAS TSTDPVVGDD VKDNEIDESN QGESWVQGLT EGDYCDLSVD 1020 ERLNALVALI GVATEGNSIR AILEERLEAA SALKKQMWAE AQLDKRRIRE DFTSKIQYDS 1080 CVGLKVDTDR ENNAAESTLT PVHNPIKNND GNANTANTDL LVDKQNQHIT GDIAHHQNGV 1140 SRESTINPES LSVQQYASSE KTRSQLKSYI GHKAEQLYIY RSLPLGQDRR RNRYWQFSAS 1200 SSSYDPGSGR IFFESRDGYW RVIDSAEAFE ALVASLDTRG IRESHLHSML QSIEPTFKEA 1260 VEKKRCSSLE HPAGRILKNG SNEIISTNHG NEFGSPCSIL SGVASDNVAH SDTFKIELGR 1320 NEAEKIAISK RAYVFVKWMW RECYSHQSTY AMKYGKKRWP ELIQSCDYCY QIYLAEERHC 1380 SSCHKTFKPI HNFLEHSSQC EEKHRTDPNW KMQIVDHSVP IGLRLLKLLL ATIEASIPAE 1440 ALQPFWTDGY RKSWGVKLYS ASSAEEVLQM LSMLEGAVKR DYLSSNFETT IELLNLNTQD 1500 TNQNSVARSG SATVLPWVPD TTAAIALRLF DLDSSISYTL HPKAASNKER EAGDFTNLPP 1560 RHPTIKNKQE IDQFGSIGFD QQYGVLLTNS NGRRGRGRGS RGGSRGGRSH SRGGKVPRGI 1620 SSSSRIQFRD DNNGSYEKGP RKIAKNTRGR GRGRGRGRGR GRGLRTVRPR QPSELGIRSI 1680 PKANLLGSFS MLSKANRSGK MHSPESSGAE DWALERREYV EDDDNNSVSQ SDESEENEEN 1740 GEPLNEEYDD ELVPGYPRDN SESSPLQMMD DGSEDNDEDA EGDEDGEDGE DYEAEDPVGD 1800 EDDDVEMGGD GEIGDEDDDD DDDDGGDGVG NADVDEGGTS YSSEYSE*

Sequence ? help Back to Top

Protein Sequence Length: 1848 aa Download sequence Send to blast

MESSGDGGDE GAGAAAVGMG SPGPASAPAA VGGGGSGAGA SGSGGKPPVK RVMKTPYQLE  60
VLERTYAEDS YPNETKRAEL SVQLGLTDRQ LQMWFCHRRL KDRKPPAKRQ QRDEEVTVPV  120
IAPPPVLPPP LPHSEIMVGT VGTYGEQLLP YSRRGPGRSS AVPRISVPEI GRRYYEPPQV  180
ILPHMAAVHL TQAEHRMIDS VETLIGEPLR DDGPVLGVEF DPLPPGAFGA PIVPEQPKQP  240
YRSYEPKMFS GRDPKPMKAS AFLPTIDPLL PNTVNGKRKS LVGSSSHLGS QAVHEYQFLP  300
EQPSDVYERA SQSRFYDTST EASNSRIASL STGSRFLHGV EQAPSYAFHG QLSGSSHLAQ  360
HGRSPIPSGS TDHEGALSNI NVSPAPFHGQ FGIPQVAGFE TPLASSERMG YHDEDTYRVD  420
RKRKHNEEAK IAKEVEAHEK RIRKELEKQD LLNRKREEQM RRETERHDRE RRKEEERLMR  480
ERQREEERFQ KEQRREHKRM EKFMQKQSIR AEKLRQKEEL RREKEAARQK AANEKATARR  540
IAREAMELME DERLELLELA YRSKGLPSMV SLDIDTLQQL DSFRGMLGQF PPETVRLKVP  600
FSTKPWAASE DNIGNLLMVW KFFITFADVL GLPSFTLDEF VQALHDYDSR FLGELHVALL  660
KSIIKDIEDV ARTPSVALGV NQSGSANPGG GHPQIVEGAY AWGFNILNWQ RHLNFLTWPE  720
ILRQFGLCAG FGPQLKKRNA GTVHYRDDNE GRDGADIIST LRNGSAAVNA AALMKERGYT  780
NRRRSRHRLT PGTVKFAAYH VLSLEGSKGL TILEVAEKIQ KSGLRDLTTS KTPEASISAA  840
LSRDTKLFER TAPSTYCVKT PYRKDPADSE TVLSAAREKI RVFQNALSEC EEVEKDVDEA  900
ERDADSECDD ADDDVDGDDM NIEDKDVKSP LVRAQDGAPV TVVGDIKQES NSVVNTLVPQ  960
STQTKCSESV SLRTLDIKAS TSTDPVVGDD VKDNEIDESN QGESWVQGLT EGDYCDLSVD  1020
ERLNALVALI GVATEGNSIR AILEERLEAA SALKKQMWAE AQLDKRRIRE DFTSKIQYDS  1080
CVGLKVDTDR ENNAAESTLT PVHNPIKNND GNANTANTDL LVDKQNQHIT GDIAHHQNGV  1140
SRESTINPES LSVQQYASSE KTRSQLKSYI GHKAEQLYIY RSLPLGQDRR RNRYWQFSAS  1200
SSSYDPGSGR IFFESRDGYW RVIDSAEAFE ALVASLDTRG IRESHLHSML QSIEPTFKEA  1260
VEKKRCSSLE HPAGRILKNG SNEIISTNHG NEFGSPCSIL SGVASDNVAH SDTFKIELGR  1320
NEAEKIAISK RAYVFVKWMW RECYSHQSTY AMKYGKKRWP ELIQSCDYCY QIYLAEERHC  1380
SSCHKTFKPI HNFLEHSSQC EEKHRTDPNW KMQIVDHSVP IGLRLLKLLL ATIEASIPAE  1440
ALQPFWTDGY RKSWGVKLYS ASSAEEVLQM LSMLEGAVKR DYLSSNFETT IELLNLNTQD  1500
TNQNSVARSG SATVLPWVPD TTAAIALRLF DLDSSISYTL HPKAASNKER EAGDFTNLPP  1560
RHPTIKNKQE IDQFGSIGFD QQYGVLLTNS NGRRGRGRGS RGGSRGGRSH SRGGKVPRGI  1620
SSSSRIQFRD DNNGSYEKGP RKIAKNTRGR GRGRGRGRGR GRGLRTVRPR QPSELGIRSI  1680
PKANLLGSFS MLSKANRSGK MHSPESSGAE DWALERREYV EDDDNNSVSQ SDESEENEEN  1740
GEPLNEEYDD ELVPGYPRDN SESSPLQMMD DGSEDNDEDA EGDEDGEDGE DYEAEDPVGD  1800
EDDDVEMGGD GEIGDEDDDD DDDDGGDGVG NADVDEGGTS YSSEYSE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1651	1661	RGRGRGRGRGR
2	1653	1662	RGRGRGRGRG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.3G149700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004961229.1	0.0	homeobox-DDT domain protein RLT2
TrEMBL	K3Z331	0.0	K3Z331_SETIT; Uncharacterized protein
STRING	Si020949m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2283	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Sevir.3G149700.1.p