PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sevir.3G149500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 316aa MW: 34160.3 Da PI: 9.3198 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 103.6 | 2.5e-32 | 60 | 207 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra... 77 lp+G++F+Ptd+el+ e+L+ k++ ++ + + +i+ +i++++P++Lp v+++ +fF++ +++y+tg+rk+r+ Sevir.3G149500.1.p 60 LPAGVKFDPTDQELL-EHLEGKARPDSrrlhplV---DefipTIEGEnGICYTHPERLP-GVNKDGLVRHFFHRPSRAYTTGTRKRRKvhs 145 799************.99****998886675442...133323665557**********.666666788******************8688 PP NAM 78 ..........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++vls +g+ g kk+Lv+y g+++k+ekt+Wvmh+y+l Sevir.3G149500.1.p 146 gdgddgasgaGGETRWHKTGKTRPVLS-NGRPRGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 207 888888876544778************.999***********6657999999*********98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.05E-38 | 51 | 226 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.344 | 60 | 226 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.5E-14 | 61 | 207 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 316 aa Download sequence Send to blast |
MTWCNGFNDV ESSLSPAAAV AAAGKKAAAS LAVLVKMCPS CGHRAQYEQE TTTIQDLPGL 60 PAGVKFDPTD QELLEHLEGK ARPDSRRLHP LVDEFIPTIE GENGICYTHP ERLPGVNKDG 120 LVRHFFHRPS RAYTTGTRKR RKVHSGDGDD GASGAGGETR WHKTGKTRPV LSNGRPRGYK 180 KILVLYTNYG KQRKPEKTNW VMHQYHLGSD EEERDGELVV SKVFFQTQPR QCGSTAAKEA 240 VAANAVANSN AHALGGHQQG GSVLREANGV DQFYNPGTMM GYGQGVPNNR VPPAPAAAHF 300 MPNFAVHAAR ATFGP* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sevir.3G149500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK100983 | 0.0 | AK100983.1 Oryza sativa Japonica Group cDNA clone:J023145A15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004961226.1 | 0.0 | NAC domain-containing protein 73 | ||||
Swissprot | O49459 | 1e-121 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | K3Z840 | 0.0 | K3Z840_SETIT; Uncharacterized protein | ||||
STRING | Si022710m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3075 | 37 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-113 | NAC domain containing protein 73 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sevir.3G149500.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|