PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G148100.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WOX
Protein Properties Length: 484aa    MW: 50898.8 Da    PI: 7.3862
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G148100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox48.31.8e-1551110256
                         T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56 
                         r+R+++ +eq+++Le  F++   +p ++e++++  +l     + +++V++WFqNr+ + k
  Sevir.3G148100.1.p  51 RPRWNPRPEQIRILEGIFNSgMVNPPRDEIRRIRLQLqeygPVGDANVFYWFQNRKSRTK 110
                         89*****************99****************99999****************99 PP
2Wus_type_Homeobox105.92.6e-3450112264
   Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                         +r+RW+P+peQi+iLe +++sG+++P+++ei+ri+ +L+eyG ++d+NVfyWFQNrk+R ++k
  Sevir.3G148100.1.p  50 PRPRWNPRPEQIRILEGIFNSGMVNPPRDEIRRIRLQLQEYGPVGDANVFYWFQNRKSRTKHK 112
                         689**********************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.01E-1146116IPR009057Homeodomain-like
PROSITE profilePS500719.96147112IPR001356Homeobox domain
SMARTSM003892.4E-649116IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.2E-650111IPR009057Homeodomain-like
CDDcd000864.66E-750112No hitNo description
PfamPF000463.6E-1351111IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010075Biological Processregulation of meristem growth
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MASSNRHWPS MYRSSLACNF QQPQPDMNNG GGGKSLMSSR SEESGRNPEP RPRWNPRPEQ  60
IRILEGIFNS GMVNPPRDEI RRIRLQLQEY GPVGDANVFY WFQNRKSRTK HKLRAAGQLQ  120
PSGRAALSRA CAPPPPALAP APMTPPRHLL ASPVAPTSSS SSSSDRSSGS SKSARTAVLL  180
PPPAAAAIQG VLPATAIDLL SPKPTPALAA HQLYYHSQQL MAPAVPPPMP ELITSPEPFL  240
LQWQQQGGHY LPATELGGVL GAHTHEPPPA MHPAVSPSVL LGLCNEALGQ DCVDIISSKQ  300
QGLGHGQYWN TTCGSDLSSN NKTDAVSDVI RDDEKARLGL LHYGFGAAAA AATSAPLAAP  360
VQPAAADAST AMLLPSSAPS NVAAATSSVL TDQLQGLLDP GLIGGTPLPP PTATVVVVAR  420
DAVTCAVTAQ FSVPAMRLDV KLAFGDAAVL VRHTGEPVLV DESGVTVEPL QQDTLYYLLM  480
VTH*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G148100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9498961e-145EU949896.1 Zea mays clone 451620 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961209.10.0WUSCHEL-related homeobox 12
SwissprotA3B6V01e-144WOX12_ORYSJ; WUSCHEL-related homeobox 12
TrEMBLA0A368QEX00.0A0A368QEX0_SETIT; Uncharacterized protein
STRINGSi025013m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26663470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.17e-33homeobox-3
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]