PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G148000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 277aa    MW: 29608.9 Da    PI: 6.1562
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G148000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.4e-19120171256
                 AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          y+GVr+++ +g+++AeIrd  +   k +r++lg+f taeeAa a+++a+++++g+
  Sevir.3G148000.1.p 120 SYRGVRRRP-WGKFAAEIRDtRR---KGARVWLGTFTTAEEAALAYDKAALRMRGP 171
                         69*******.**********332...34**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.12E-28119178No hitNo description
PROSITE profilePS5103223.565120178IPR001471AP2/ERF domain
PfamPF008471.6E-14120170IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-31120178IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-23120180IPR016177DNA-binding domain
SMARTSM003802.7E-36120184IPR001471AP2/ERF domain
PRINTSPR003679.7E-11121132IPR001471AP2/ERF domain
PRINTSPR003679.7E-11144160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MTIGAPGSHH QPGNEAANIL ENVWATIMTE STTTPASSTA ASSEVGEEKP EAILQRLPSL  60
GRWISMGAEE WDELLLSGAA LTSDASGELL LAASPAASQD QDRRDDRRAS SNKAAVACKS  120
YRGVRRRPWG KFAAEIRDTR RKGARVWLGT FTTAEEAALA YDKAALRMRG PRAHLNFPLD  180
VVQRELAGNG GFGEASRVLR RRRRGSNAAA DTRSHGSVSA TDGGCDQTMV SFACGRKDQG  240
ASSPMVQEPS ISDPGAVIEF EDIGGEYWDY LFAPLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-27119181466ATERF1
3gcc_A1e-27119181466ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G148000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU6854121e-119KU685412.1 Saccharum spontaneum clone SES23E05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022680541.10.0ethylene-responsive transcription factor ERF094-like
TrEMBLK3ZCI30.0K3ZCI3_SETIT; Uncharacterized protein
STRINGSi024258m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116162736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.15e-21ethylene responsive element binding factor 2