PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G147200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 405aa    MW: 42929.7 Da    PI: 7.1609
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G147200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.33.1e-33190247259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dgy+WrKYGqK vk+s+fprsYYrCt+++Cpvkk+vers +d  vv++tYeg+H+h+
  Sevir.3G147200.1.p 190 EDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCPVKKRVERSYQDAAVVITTYEGKHTHP 247
                         8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.7E-35174249IPR003657WRKY domain
SuperFamilySSF1182903.4E-29181249IPR003657WRKY domain
PROSITE profilePS5081131.95184249IPR003657WRKY domain
SMARTSM007743.2E-39189248IPR003657WRKY domain
PfamPF031062.9E-26190247IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MSGARHDHAG SHHQHHLSGD FQFHDELVSL FAQRPDAPAT PMMQQPWFTD YLQATAPTPL  60
DYDAFAGDFD VPAVDEVVKR ELVVDTTGGA AAGSGGGATT VPLTPNSMSM SSTSSEACGA  120
GAGAGEESAA GKCKKEEGEE SKDGSSAAKG DVEGEEKNKK GAAKGKGKGE KRPRQPRFAF  180
MTKSEVDHLE DGYRWRKYGQ KAVKNSPFPR SYYRCTTQKC PVKKRVERSY QDAAVVITTY  240
EGKHTHPIPA TLRGSSHLLA AHHHAGLHHP HFRMPLPPPA LGALAFRPGG GAGNAFDALG  300
LLQPPPPQGQ GHHHAMPQQL VTGAGAAAVS TGFQQVNAAI ASQHALPDHQ HDLAAGTTAA  360
TATAAASAPL RMQHFMAQDY AGLLQDMFPS FLHNNDDGDT HHHH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-26180250878Probable WRKY transcription factor 4
2lex_A2e-26180250878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G147200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961203.10.0probable WRKY transcription factor 28
TrEMBLK3Z6Q10.0K3Z6Q1_SETIT; Uncharacterized protein
STRINGSi022220m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.11e-47WRKY DNA-binding protein 71