PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.3G141500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 280aa MW: 30173 Da PI: 9.3931 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.1 | 2.5e-19 | 104 | 154 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr++ +g+WvAeIr p + r r++lg+++++e Aa a+++a+ kl+ge Sevir.3G141500.1.p 104 LYRGVRQRQ-WGKWVAEIRLPQN---RVRVWLGTYDSPETAAHAYDRAAFKLRGE 154 59****999.**********954...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.94E-30 | 103 | 161 | No hit | No description |
SMART | SM00380 | 2.9E-34 | 104 | 167 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-30 | 104 | 161 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.169 | 104 | 161 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.16E-22 | 104 | 161 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.9E-13 | 105 | 154 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-12 | 105 | 116 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-12 | 143 | 163 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MDASLRTLSP ASFPGEVRSA VSSLLLSSPG TSALDTVFSH LPPPVTIPPL GSSVYYRQCE 60 LLRHFAASQP QAAACSYSSS SSAASLQAPP DDAAAAAAML RQKLYRGVRQ RQWGKWVAEI 120 RLPQNRVRVW LGTYDSPETA AHAYDRAAFK LRGEYARLNF PGVMDGQDCP EHLRQLRAAI 180 DAKIQAIRTR LARKRARARK QREESARSEG AKAATATASA RPVVSEGATT TSETTTTSTT 240 PYGSPDGVLS MSAASADGDC PLERMPSFDP ELIWEMLNF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-18 | 101 | 161 | 2 | 63 | ATERF1 |
3gcc_A | 1e-18 | 101 | 161 | 2 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 191 | 197 | ARKRARA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.3G141500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC104284 | 1e-111 | AC104284.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1735_C10, complete sequence. | |||
GenBank | AP014961 | 1e-111 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | CT837611 | 1e-111 | CT837611.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA042N08, full insert sequence. | |||
GenBank | CT841687 | 1e-111 | CT841687.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C102K07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004961160.1 | 0.0 | ethylene-responsive transcription factor ERF061 | ||||
TrEMBL | A0A368QEQ5 | 0.0 | A0A368QEQ5_SETIT; Uncharacterized protein | ||||
STRING | Pavir.J01332.1.p | 1e-142 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8828 | 28 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39780.1 | 6e-33 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.3G141500.1.p |