PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G138700.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C3H
Protein Properties Length: 327aa    MW: 35444.1 Da    PI: 7.2487
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G138700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH47.53e-15252276226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         ktelC+ + +tG C+yGd+C+FaHg
  Sevir.3G138700.2.p 252 KTELCNKWEETGACPYGDQCQFAHG 276
                         9***********************8 PP
2zf-CCCH20.21e-06289314126
                         --S---SGGGGTS.--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartG.tCkyGdrCkFaHg 26 
                         ykte+Cr  ++ G  C+yG rC+F H+
  Sevir.3G138700.2.p 289 YKTEICRMVLA-GvLCPYGHRCHFRHS 314
                         9**********.66**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.88E-10249282IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-9250277IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.488250278IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-17250283IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-12252276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-11284315IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-8285315IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4288315IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.141288316IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MEVVLAPAQP DGLLAAFGPK EPCGFGDRRF TSPSQLTNGD DLFYGYSSPS SPFGLASVLS  60
TPSPCAASLS RGSSDSGSVV DDGDDAAAAA DRRHRLARLA LQYQEVLARF ELCLSYLADA  120
SNEAAALRRE NDELRVANED LARRIKMVGD KLADEFSGLR LAEGHGHPTP LRPLAPLPVV  180
PALPKSISVR SPGYLKMNQN GKHRPSKPTK LGSRVFVGMD GSVKEDGERK GGEEKKLNSG  240
LEFEVYSQGT LKTELCNKWE ETGACPYGDQ CQFAHGIAEL RPVIRHPRYK TEICRMVLAG  300
VLCPYGHRCH FRHSVSPADL FPQHDV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-22252314567Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G138700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961139.10.0zinc finger CCCH domain-containing protein 39
SwissprotQ6L5G11e-106C3H39_ORYSJ; Zinc finger CCCH domain-containing protein 39
TrEMBLK3Z7X80.0K3Z7X8_SETIT; Uncharacterized protein
STRINGSi022648m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.17e-53C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]