PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.3G138700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | C3H | ||||||||
Protein Properties | Length: 328aa MW: 35572.2 Da PI: 7.2487 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 47.5 | 3e-15 | 253 | 277 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ + +tG C+yGd+C+FaHg Sevir.3G138700.1.p 253 KTELCNKWEETGACPYGDQCQFAHG 277 9***********************8 PP | |||||||
2 | zf-CCCH | 20.2 | 1e-06 | 290 | 315 | 1 | 26 |
--S---SGGGGTS.--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaHg 26 ykte+Cr ++ G C+yG rC+F H+ Sevir.3G138700.1.p 290 YKTEICRMVLA-GvLCPYGHRCHFRHS 315 9**********.66**********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 2.88E-10 | 250 | 283 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-17 | 251 | 284 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.488 | 251 | 279 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.2E-9 | 251 | 278 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-12 | 253 | 277 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-11 | 285 | 316 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.84E-8 | 286 | 316 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.141 | 289 | 317 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-4 | 289 | 316 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MEVVLAPAQP DGLLAAFGPK EPCGFGDRRF TSPSQLTNGD DLFYGYSSPS SPFGLASVLS 60 TPSPCAASLS RGSSDSGSVV DDGDDAAAAA DRRHRLARLA LQYQEVLARF ELCLSYLADA 120 SNEAAALRRE NDELRVANED LARRIKMVGD KLADEFSGLR LAEGHGHPTP LRPLAPLPVV 180 PALPKSISVR SPGYLKMNQN GKHRPSKPTK LGSQRVFVGM DGSVKEDGER KGGEEKKLNS 240 GLEFEVYSQG TLKTELCNKW EETGACPYGD QCQFAHGIAE LRPVIRHPRY KTEICRMVLA 300 GVLCPYGHRC HFRHSVSPAD LFPQHDV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1rgo_A | 2e-22 | 253 | 315 | 5 | 67 | Butyrate response factor 2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.3G138700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004961139.1 | 0.0 | zinc finger CCCH domain-containing protein 39 | ||||
Swissprot | Q6L5G1 | 1e-109 | C3H39_ORYSJ; Zinc finger CCCH domain-containing protein 39 | ||||
TrEMBL | K3Z7X8 | 0.0 | K3Z7X8_SETIT; Uncharacterized protein | ||||
STRING | Si022648m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2775 | 37 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66810.1 | 9e-53 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.3G138700.1.p |
Publications ? help Back to Top | |||
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