PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G135800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ZF-HD
Protein Properties Length: 268aa    MW: 28974.6 Da    PI: 8.6199
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G135800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer92.73.2e-294093257
         ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                        ++vrY+eCl+NhAa+lGgh+vDGCgEfmp  g+    +alkCaACgCHR+FHR++ 
  Sevir.3G135800.1.p 40 AAVRYHECLRNHAAALGGHVVDGCGEFMPGAGA--GDDALKCAACGCHRSFHRKDD 93
                        579**************************8555..589****************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257748.0E-194292IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.8E-254292IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.5E-254392IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.314492IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.1E-30173237IPR009057Homeodomain-like
SuperFamilySSF466898.41E-19175236IPR009057Homeodomain-like
TIGRFAMsTIGR015656.5E-27179235IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MEFRGQEEPA EGMGASSAPP LAPAPAPAPV PGNHAALPEA AVRYHECLRN HAAALGGHVV  60
DGCGEFMPGA GAGDDALKCA ACGCHRSFHR KDDGQRRQLL LPPPLAPPPP VTPTAPRVPL  120
LLPPPHPYAA AATHPHYAPP PFPYHGTPSG SGGTTTESSS EERGPPSAHL AAAQGHLRRK  180
RFRTKFTPEQ KEQMLAFAER LGWRMQKQDE ALVQQFCEQV GVRRQVFKVW MHNNKHSGSG  240
SRRQPQLPPQ EQQSQQQPQP QPQQEQQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-281802411879ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G135800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961117.11e-136zinc-finger homeodomain protein 6-like
SwissprotQ688U34e-92ZHD6_ORYSJ; Zinc-finger homeodomain protein 6
TrEMBLA0A368QET71e-135A0A368QET7_SETIT; Uncharacterized protein
STRINGPavir.J15638.1.p1e-124(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.14e-27homeobox protein 21
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]