PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.3G113300.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

NAC

Protein Properties

Length: 345aa MW: 38231.8 Da PI: 8.6859

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.3G113300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	108.5	8.1e-34	50	196	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra... 77 lp+G++F+P+d+el+ e+L+ v++ + + +ik +i++++P++Lp v+ + +fF++++k+y+tg+rk+r+ Sevir.3G113300.1.p 50 LPAGVKFDPSDQELI-EHLESLVKEGGsrahplI---DdfipTIKGDdGICYTHPENLP-GVTRDGLTKHFFHRTSKAYTTGTRKRRKiqs 135 799**********.99*99985665432...133333665546******.555666789**************8799 PP NAM 78 .........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +++W++tgk+++v++ +g+++g+kk+Lv+y g++ k+ekt+Wvmh+y+l Sevir.3G113300.1.p 136 drglhgsedVGEARWHKTGKTRPVIV-GGQQKGCKKILVLYvnYGKQGKPEKTNWVMHQYHL 196 9999998887799*********.9*********7768999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-36	44	214	IPR003441	NAC domain
PROSITE profile	PS51005	31.786	50	214	IPR003441	NAC domain
Pfam	PF02365	1.3E-14	51	196	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MNRGHSGSMV SSCCTSEPTE EKHKDRQTSA SRRCPSCGHS FDSNPDMIGL PAGVKFDPSD 60 QELIEHLESL VKEGGSRAHP LIDDFIPTIK GDDGICYTHP ENLPGVTRDG LTKHFFHRTS 120 KAYTTGTRKR RKIQSDRGLH GSEDVGEARW HKTGKTRPVI VGGQQKGCKK ILVLYVNYGK 180 QGKPEKTNWV MHQYHLGDQE EKDGQLVVSK VFYQTQLRSG TAMVEQRTRE GENVAEASEA 240 MQNVLPGCAA DATAATVAMV PQHQQKRQRQ STGGHCSIAT SKMSHEIGAV GNQVSRDQGE 300 KSVTTTTYHH NSMSDQICMQ NKYPPCLSMS VHHRTQFQQQ YNLK*

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MNRGHSGSMV SSCCTSEPTE EKHKDRQTSA SRRCPSCGHS FDSNPDMIGL PAGVKFDPSD  60
QELIEHLESL VKEGGSRAHP LIDDFIPTIK GDDGICYTHP ENLPGVTRDG LTKHFFHRTS  120
KAYTTGTRKR RKIQSDRGLH GSEDVGEARW HKTGKTRPVI VGGQQKGCKK ILVLYVNYGK  180
QGKPEKTNWV MHQYHLGDQE EKDGQLVVSK VFYQTQLRSG TAMVEQRTRE GENVAEASEA  240
MQNVLPGCAA DATAATVAMV PQHQQKRQRQ STGGHCSIAT SKMSHEIGAV GNQVSRDQGE  300
KSVTTTTYHH NSMSDQICMQ NKYPPCLSMS VHHRTQFQQQ YNLK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.3G113300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004960907.1	0.0	NAC domain-containing protein 73
Swissprot	Q9M0F8	1e-100	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	K3ZE96	0.0	K3ZE96_SETIT; Uncharacterized protein
STRING	Si024889m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1453	38	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-101	NAC domain containing protein 75

Link Out ? help Back to Top
Phytozome	Sevir.3G113300.1.p

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]