PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.3G107200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NAC | ||||||||
Protein Properties | Length: 237aa MW: 25115.5 Da PI: 10.0489 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 35.4 | 3.1e-11 | 93 | 190 | 34 | 128 |
NAM 34 ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWk..atgkdkevlskkgelvglkktLvfykg.rapkgektd 120 i + d +++ ++L + ++++ke +fF++ + + +g++++ t g W+ +t + + ++e+ + kk L f+ g k e+t Sevir.3G107200.1.p 93 ILDDDPLSASSQELL-ERNGHKKEAFFFVEGQPRCGKGTQQKGtCTGGGWWEgqKTCAEGDTSPDSSEAAWRKKALKFHCGsGGGKKESTG 182 556666677777775.44567889*************99999868889999844555666776669999**********6634455679** PP NAM 121 Wvmheyrl 128 Wvm ey++ Sevir.3G107200.1.p 183 WVMYEYAV 190 ******86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 11.278 | 59 | 214 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.62E-15 | 66 | 194 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-7 | 73 | 189 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MASAAGMKEK KMSRSTFNGS KGTRVWAPSA GARPAPSATQ APACVNPKQA IASPIAQEQE 60 RAKRSAMAAI ELPPGILFAP EDKVVLLPAD GLILDDDPLS ASSQELLERN GHKKEAFFFV 120 EGQPRCGKGT QQKGTCTGGG WWEGQKTCAE GDTSPDSSEA AWRKKALKFH CGSGGGKKES 180 TGWVMYEYAV NPTPPPLGGS GPIAHIRLSS YDRKQSRGSL ARRPFSSVHR FGGIFI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.3G107200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002438091.1 | 5e-53 | uncharacterized protein LOC8065510 | ||||
TrEMBL | A0A368QDL4 | 1e-123 | A0A368QDL4_SETIT; Uncharacterized protein | ||||
STRING | Si025175m | 1e-118 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP802 | 22 | 137 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.3G107200.1.p |