PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G095000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family FAR1
Protein Properties Length: 713aa    MW: 80788.3 Da    PI: 5.4125
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G095000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR180.62.8e-2581170289
                FAR1   2 fYneYAkevGFsvrkskskkskrnge.itkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                         fYneYA+++GF  r+ +s++sk ++e +++++fvCs+eg  ++++k+  + +++r+r++ r gC+a+++v +e +++w+v+kle+ HnH+l
  Sevir.3G095000.1.p  81 FYNEYARRLGFPFRVGRSRRSKGTEEvVVMKRFVCSREGMYKKKHKSpdEATRKRERMSMREGCNAMMEVVRE-SDHWVVSKLEKAHNHDL 170
                         9********************766551789**********9999999777888899***************99.9**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-2281170IPR004330FAR1 DNA binding domain
PfamPF105517.4E-28264355IPR018289MULE transposase domain
PROSITE profilePS5096611.301543579IPR007527Zinc finger, SWIM-type
PfamPF044348.0E-9549576IPR007527Zinc finger, SWIM-type
SMARTSM005750.0026554581IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MEGERTEGDE LIDDYVDCLM SLDTNARPGP SDGLILGAPV VEGAVGGGME PDAMRDFASA  60
EDPKEPVLGM TFESDEAAKA FYNEYARRLG FPFRVGRSRR SKGTEEVVVM KRFVCSREGM  120
YKKKHKSPDE ATRKRERMSM REGCNAMMEV VRESDHWVVS KLEKAHNHDL GTCSTNVGYL  180
RARGLLGSSD KVTMVGPDEM AFLRQNVLGE GGDAQGLIDY LKKTQANDPA FSHAIQVDKN  240
GCVVNVFWAD SRAKAAYRHF GDAVTFDTSY KKNKYMMPFV TFSGVNHHLQ PVIFGCALLM  300
EETEFSFVWL FETWLAAMGG KAPCSLVTDQ NRAMKAAIGK VFPNSYHRFC KWNILSRTKQ  360
KLTHVYTEHP TLRDELESCI LESETIATFE TAWMSIIDKY DLRKNSWLQA IYNIRQKWVP  420
LYLMDTFFAE VSPAWKLETM NDFYKKYFNT KTTLEVFLNQ FNLSMASQYD DEAKADMDTY  480
VNKATTKTAS LIEKQAASTY TKAVFSKFQE EFTESLGFVI QKIEDGSISK YSITKDEDPS  540
ETFYVTYSAS NKMANCSCKY FEFSGILCRH ILGVYIIVDP RTLPPDYFLK RWTRKARDDN  600
AVLEENNNYH DEDPSQSITS RYNVLCVDAI KCAEKGAGSE AVYKAAKDIL QKAYEEIIAY  660
ERNPGRGSQR DDININEDVT IDDTMNDQSM PDSGRKVTNL LGQFLDSSWS PV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G095000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1693780.0AC169378.2 Sorghum bicolor clone SB_BBc0007L02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012700148.10.0protein FAR1-RELATED SEQUENCE 5
RefseqXP_012700149.10.0protein FAR1-RELATED SEQUENCE 5
RefseqXP_012700150.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A368QD210.0A0A368QD21_SETIT; Uncharacterized protein
STRINGPavir.J33683.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-157FAR1-related sequence 5