PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.3G081600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB | ||||||||
Protein Properties | Length: 969aa MW: 106920 Da PI: 4.8938 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 63.7 | 3.6e-20 | 48 | 94 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l +av+ + g++Wk+Ia++++ gRt+ qc +rwqk+l Sevir.3G081600.1.p 48 KGNWTAEEDDILRKAVETYKGKNWKKIAECFP-GRTDVQCLHRWQKVL 94 79******************************.************986 PP | |||||||
2 | Myb_DNA-binding | 61 | 2.4e-19 | 100 | 146 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde++++ v++lG++ W+tIa+ ++ gR +kqc++rw+++l Sevir.3G081600.1.p 100 KGPWSKEEDEIIIQMVNKLGPKKWSTIAQALP-GRIGKQCRERWHNHL 146 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 48.1 | 2.6e-15 | 152 | 194 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT+eE+ +l++a++ +G++ W+ + ++ gRt++ +k++w+ Sevir.3G081600.1.p 152 KDAWTQEEEIKLIHAHQTYGNK-WAELTKFLP-GRTDNAIKNHWH 194 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.179 | 43 | 94 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.33E-17 | 45 | 101 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-18 | 47 | 96 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-17 | 48 | 94 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.97E-16 | 50 | 94 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-25 | 50 | 111 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 32.04 | 95 | 150 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.77E-31 | 97 | 193 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-18 | 99 | 148 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-17 | 100 | 146 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.08E-15 | 102 | 146 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-26 | 112 | 153 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.8E-14 | 151 | 199 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.353 | 151 | 201 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.9E-13 | 152 | 194 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-21 | 154 | 201 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.41E-11 | 154 | 194 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 969 aa Download sequence Send to blast |
MTSEKQMASK GTEASAPAVP PDGAVSREPQ KGRLPNGRTT GPARRSSKGN WTAEEDDILR 60 KAVETYKGKN WKKIAECFPG RTDVQCLHRW QKVLNPELVK GPWSKEEDEI IIQMVNKLGP 120 KKWSTIAQAL PGRIGKQCRE RWHNHLNPGI NKDAWTQEEE IKLIHAHQTY GNKWAELTKF 180 LPGRTDNAIK NHWHSSVKKK VDSYRASGLL AQFQGLTPVE YTAGGLNVDS SSAMTNQISE 240 DSGFNVCREV EDSTELSQSS FVKGSCSQEE QTDVALGSHL NVHESLCQDG FTNADNVASA 300 LPDMHHQLST SDMDQGKHLQ EEFSQGMDLD KHLQQEFSQG MDLHLDIDEV PNNFVITDSQ 360 ASSELAGQFQ DTQIMHNLEN DGGSLIPCAV TPCVPILPSV SECEHNINMM SEVGIKNDNC 420 FHPEQWQDIS IQPGVYSSEA ASNFSAPLCP LKTSEPASNF SVPLCPLKTS EPATMMGDHL 480 YYQSSETSLP PSFIFSDVAS NASDVKFETS HCCQDLEIKT CYNASGDPGQ NSYISTEDDR 540 NQTSEPMDSI PEPEKEQLVD LEQSCLEPTA YNGEEALPSQ GDTVLSDKED AGALCYEPPC 600 FSSFEVPFVS CELVTSSDLP EYSPLGIREL MRSSLNFPTP VRLWGSPTRD GSPDAVLKNA 660 AKSFVRTPSI MKKRPRDLSS PSPDIRNEKK SNTEKDCGRS GMSSTRIGKS FMDIPDDFFD 720 LVSPRSAFQK KLKLSQENKE NLDQITDQGE NEGNAKHSAG ILTESSVDNQ NTPKHAPNYE 780 SQRLNTSTKA LSNSKDIIFS RSKPSELLVD KSAPFIDAEY EYVNILADTP GIKRGLESPS 840 AWKSPLFTPF KDAYFMSPAS RSVDALGLVK QINEQSAAAL EEAHEVLASG SPWKRHSKEN 900 SDKENIENVA WKNELATSKS LSKLMAEGRV LDFNECSTPV RKKEDKKMDI GGSASSPVAS 960 SYLRMNVR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 2e-66 | 48 | 201 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-66 | 48 | 201 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (PubMed:21862669). Involved in the regulation of cytokinesis, probably via the activation of several G2/M phase-specific genes transcription (e.g. KNOLLE) (PubMed:17287251, PubMed:21862669, PubMed:25806785). Required for the maintenance of diploidy (PubMed:21862669). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:21862669, ECO:0000269|PubMed:25806785}.; FUNCTION: Involved in transcription regulation during induced endoreduplication at the powdery mildew (e.g. G.orontii) infection site, thus promoting G.orontii growth and reproduction. {ECO:0000269|PubMed:20018666}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.3G081600.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by salicylic acid (SA) (PubMed:16463103). Expressed in a cell cycle-dependent manner, with highest levels 2 hours before the peak of mitotic index in cells synchronized by aphidicolin. Activated by CYCB1 (PubMed:17287251). Accumulates at powdery mildew (e.g. G.orontii) infected cells. {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:17287251}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004960645.1 | 0.0 | transcription factor MYB3R-1 | ||||
Refseq | XP_004960646.1 | 0.0 | transcription factor MYB3R-1 | ||||
Refseq | XP_004960647.1 | 0.0 | transcription factor MYB3R-1 | ||||
Swissprot | Q94FL9 | 2e-99 | MB3R4_ARATH; Transcription factor MYB3R-4 | ||||
TrEMBL | A0A368QCK3 | 0.0 | A0A368QCK3_SETIT; Uncharacterized protein | ||||
STRING | Si021218m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2495 | 38 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11510.2 | 1e-102 | myb domain protein 3r-4 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.3G081600.1.p |
Publications ? help Back to Top | |||
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