PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.3G067200.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

GRAS

Protein Properties

Length: 630aa MW: 71519 Da PI: 5.9126

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.3G067200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	366.6	3.4e-112	250	621	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 l+ lL++cAea++s+++ ++lL+++++++sp+gd +Rla yf+ AL+ar+a+++s++y++l +++ts +++ l+a++lf ++P+ Sevir.3G067200.1.p 250 LRALLIQCAEAIASNNQPFDRELLTKIRDHSSPYGDDSHRLAIYFVDALEARIAGTGSQMYQKLMARRTS---TTDMLKAYRLFTAACPFT 337 5789**********************************************************999999...89************ PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180 k+++ Nq+I++ + rvHiiDf+i G+QWp+L+q +a+R++gpp+lRiTg++ pe+g +++eetg+rLa++Ae ++vpf+++ Sevir.3G067200.1.p 338 KVAYYYSNQTIVDVSVERPRVHIIDFGIVFGFQWPSLIQRFANRQGGPPNLRITGIDVPEPGfrPCKKIEETGKRLAEYAEMFNVPFQYQC 428 *********************************************************99999********************* PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 va+r+e++ +++L+++++E+l++n+ +ql +l de+ +++s+rd+vL+++ +++P+v+++ + +ns+ Fl rf eal yys+ fd+l Sevir.3G067200.1.p 429 -VASRWENICIKDLNIDKDEVLIINCLHQLNNLSDETEDIDSARDRVLRIMMRMNPEVLIIGVTNGLYNSPFFLPRFREALFYYSSQFDML 518 .7************************************************************************************* PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362 ++++ r +e+ri +Er llg ++ nvvacegaer+e+ et+++W+ r+ +aGFk++p+++++ k+ + + + + + v+e+sg+l++gW Sevir.3G067200.1.p 519 NSTVIRSHEARILIERDLLGADLFNVVACEGAERIEKPETYKQWQVRILKAGFKQLPVNQTILKSSVARKKDLYHEDFVVDEDSGWLLQGW 609 **************************************************************99999999899********** PP GRAS 363 kdrpLvsvSaWr 374 k+r L ++S+W+ Sevir.3G067200.1.p 610 KGRILHALSSWK 621 *********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	64.711	224	601	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.2E-109	250	621	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 630 aa Download sequence Send to blast
MDSSEYCEIN SNMTLEYINR ILLEEDIDEK PSIYQERDAL QATEKPFYDI LGQVYPSPAK 60 EIVLNSDSQG PDDISNNYHE GACSGSLDND FLGAQGMHLI PNDYGSETDH LSLQFTKGAE 120 EANKFVPIVE KLVVDLGSSE LAVSKQMTQA TVGQKGNHVN KIRSHPHVNL ELLNTKNSKH 180 LAISGSETIR DETFDSVLLC TGQLSRDAAH LREMKAKEAR DSSQIAQSKE YGKGKVKSRA 240 RKQQEEAIDL RALLIQCAEA IASNNQPFDR ELLTKIRDHS SPYGDDSHRL AIYFVDALEA 300 RIAGTGSQMY QKLMARRTST TDMLKAYRLF TAACPFTKVA YYYSNQTIVD VSVERPRVHI 360 IDFGIVFGFQ WPSLIQRFAN RQGGPPNLRI TGIDVPEPGF RPCKKIEETG KRLAEYAEMF 420 NVPFQYQCVA SRWENICIKD LNIDKDEVLI INCLHQLNNL SDETEDIDSA RDRVLRIMMR 480 MNPEVLIIGV TNGLYNSPFF LPRFREALFY YSSQFDMLNS TVIRSHEARI LIERDLLGAD 540 LFNVVACEGA ERIEKPETYK QWQVRILKAG FKQLPVNQTI LKSSVARKKD LYHEDFVVDE 600 DSGWLLQGWK GRILHALSSW KPKESYTNQ*

Sequence ? help Back to Top

Protein Sequence Length: 630 aa Download sequence Send to blast

MDSSEYCEIN SNMTLEYINR ILLEEDIDEK PSIYQERDAL QATEKPFYDI LGQVYPSPAK  60
EIVLNSDSQG PDDISNNYHE GACSGSLDND FLGAQGMHLI PNDYGSETDH LSLQFTKGAE  120
EANKFVPIVE KLVVDLGSSE LAVSKQMTQA TVGQKGNHVN KIRSHPHVNL ELLNTKNSKH  180
LAISGSETIR DETFDSVLLC TGQLSRDAAH LREMKAKEAR DSSQIAQSKE YGKGKVKSRA  240
RKQQEEAIDL RALLIQCAEA IASNNQPFDR ELLTKIRDHS SPYGDDSHRL AIYFVDALEA  300
RIAGTGSQMY QKLMARRTST TDMLKAYRLF TAACPFTKVA YYYSNQTIVD VSVERPRVHI  360
IDFGIVFGFQ WPSLIQRFAN RQGGPPNLRI TGIDVPEPGF RPCKKIEETG KRLAEYAEMF  420
NVPFQYQCVA SRWENICIKD LNIDKDEVLI INCLHQLNNL SDETEDIDSA RDRVLRIMMR  480
MNPEVLIIGV TNGLYNSPFF LPRFREALFY YSSQFDMLNS TVIRSHEARI LIERDLLGAD  540
LFNVVACEGA ERIEKPETYK QWQVRILKAG FKQLPVNQTI LKSSVARKKD LYHEDFVVDE  600
DSGWLLQGWK GRILHALSSW KPKESYTNQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-57	232	623	1	381	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.3G067200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022680798.1	0.0	scarecrow-like protein 9
TrEMBL	A0A368QCG2	0.0	A0A368QCG2_SETIT; Uncharacterized protein
STRING	Si024539m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1505	38	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-165	GRAS family protein

Link Out ? help Back to Top
Phytozome	Sevir.3G067200.1.p