PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.3G067100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | GRAS | ||||||||
Protein Properties | Length: 735aa MW: 83677 Da PI: 7.9586 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 342.8 | 5.9e-105 | 356 | 726 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 l++lL++cA+av+++d la++l++++++++spdgd +qRla+y++ +L+arla+ + ++y +l +++ + +e +++++l ++P+l Sevir.3G067100.1.p 356 LRTLLIHCAQAVAADDRPLATELIKKIRQHSSPDGDCIQRLAFYLVDGLEARLAGIGRQVYLKLLTKRVT---DEELFKIYNLSLAAFPLL 443 6789*********************************************************888888877...688889999999****** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180 ++s+ aN++Ilea g+ +vHi+Df++ GlQWp+L+q+++++ + pp+lRiTg++ +++g e +e+ g+rLa++A+ ++vpf+++ Sevir.3G067100.1.p 444 RVSYTFANRTILEASRGQPKVHIVDFGMCFGLQWPSLIQKFSEQ-GVPPKLRITGIDVSRPGfgTLEITEQAGKRLADYANMFKVPFQYQG 533 ******************************************95.889**********99999899999********************** PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 +++r e++++e+L++++gE+l+Vn+ +q+++l de+v+++s+rd+vLk++++++Pkv+++ + +++s+ F +rf e l +ys+lfd++ Sevir.3G067100.1.p 534 -ISSRYENIQIEDLNIEEGEVLIVNSLYQMKTLGDETVAMNSARDRVLKIMRRMNPKVFILGVVNGSYSSPFFITRFKELLFHYSSLFDMF 623 .7***************************************************************************************** PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362 ++++pr++e+r+ +E +l++re+ n+++cegaer+er et+++W++r +aGF+++p++ + +++ + ++++ + + +e+sg+l++gW Sevir.3G067100.1.p 624 DTNIPRDNEARKLIEGRLFRREALNIISCEGAERTERPETYKQWQARCLKAGFEQLPVDPAILNSILDMTKEIYHEDFVADEDSGWLLQGW 714 **************************************************************************999************** PP GRAS 363 kdrpLvsvSaWr 374 k+r + ++S W+ Sevir.3G067100.1.p 715 KGRVMHAISKWK 726 ***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 61.186 | 330 | 706 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.0E-102 | 356 | 726 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 735 aa Download sequence Send to blast |
MVIEPLSDDL HTITTTEQPY DGSCSSSQQQ LITTHNYRRS DPQFFPQPTN NESNTQLSNL 60 VTIPGMYNVS SNLRQSQLQT SAGFNPDYQR IRSNDNALHH ISRMLMEDID ERVGLHEGEA 120 ALHAAEKTFY DILGQVYPPS WPPLCSNNEV DDPDESSSSN YQKRPRRTSF TSDICSPSML 180 HALAAPLSPY NYGRSLFRPY QPLTSTGRAT RFGFPALQII RGPEDAKGFD KLVIYLDSDK 240 LSICRLTTKA KEVEKSKCAV FQITDHTNNP CTQYLGTREG RSSKQHANTI TCEISQNRKF 300 DRHLLWYRLD CFDETRSLRE LMAKQASMNS TKGQSKGPTQ QKSRGKRQIN KEVVDLRTLL 360 IHCAQAVAAD DRPLATELIK KIRQHSSPDG DCIQRLAFYL VDGLEARLAG IGRQVYLKLL 420 TKRVTDEELF KIYNLSLAAF PLLRVSYTFA NRTILEASRG QPKVHIVDFG MCFGLQWPSL 480 IQKFSEQGVP PKLRITGIDV SRPGFGTLEI TEQAGKRLAD YANMFKVPFQ YQGISSRYEN 540 IQIEDLNIEE GEVLIVNSLY QMKTLGDETV AMNSARDRVL KIMRRMNPKV FILGVVNGSY 600 SSPFFITRFK ELLFHYSSLF DMFDTNIPRD NEARKLIEGR LFRREALNII SCEGAERTER 660 PETYKQWQAR CLKAGFEQLP VDPAILNSIL DMTKEIYHED FVADEDSGWL LQGWKGRVMH 720 AISKWKPNES CTDQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-41 | 337 | 727 | 1 | 380 | Protein SCARECROW |
5b3h_A | 1e-41 | 337 | 727 | 1 | 379 | Protein SCARECROW |
5b3h_D | 1e-41 | 337 | 727 | 1 | 379 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.3G067100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809503.1 | 0.0 | scarecrow-like protein 30 | ||||
Swissprot | O80933 | 1e-139 | SCL9_ARATH; Scarecrow-like protein 9 | ||||
TrEMBL | K3ZCE3 | 0.0 | K3ZCE3_SETIT; Uncharacterized protein | ||||
STRING | Si024218m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1505 | 38 | 118 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-141 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.3G067100.1.p |