PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G066600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 451aa    MW: 47388.3 Da    PI: 9.504
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G066600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-18217267155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         + ++GVr++  +g+WvAeIr+p   + r +r +lg+f ta +Aa+a++aa+++l+g
  Sevir.3G066600.1.p 217 CPFRGVRQRT-WGKWVAEIREP---N-RgARLWLGTFATALDAARAYDAAARALYG 267
                         679****999.**********8...3.35***********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.5E-28218282IPR001471AP2/ERF domain
PROSITE profilePS5103220.323218275IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-28219274IPR001471AP2/ERF domain
PfamPF008471.0E-11219267IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-19219274IPR016177DNA-binding domain
CDDcd000186.64E-14219250No hitNo description
PRINTSPR003676.7E-9219230IPR001471AP2/ERF domain
PRINTSPR003676.7E-9241257IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MCRRDADTQE GNTCSARAVA AAAARRCTPA KGAGNGQASS GVEGTRTHVR AGGLPSGSGS  60
PGPSPPHRQA DLTRSPRAQA AGGATWPPEV RPRRRPTLHG GAMQCQAPAG RPATRRPPLS  120
LSIPFRLHCI GMHANCTPPS PPCAYKYRRQ AARPSHHQQQ QRLPLPPFHL VSQQPPQHQQ  180
GGSGKVAGGG GGRKCCPLRR SRKGCMKGKG GPENQRCPFR GVRQRTWGKW VAEIREPNRG  240
ARLWLGTFAT ALDAARAYDA AARALYGDCA RLNLLPAAAL PAAAAAAAPT NSNSMVVKAS  300
PAASPSSSPD AAVADHHHQY YDYKQEPTTM AMNMMMVAAV PSPSCCSADG ASPNSNYSNS  360
SSSAAPTPTA MQQMMMADEL AAAEQHQQAE ADDFEDYVTR LPKAEDFGLG GFQEVPPEVF  420
DEAAGGGIWD HTVGWPSAMM SGGPSQIVPF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-13219274662ATERF1
3gcc_A4e-13219274662ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G066600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1081431e-95AK108143.1 Oryza sativa Japonica Group cDNA clone:002-139-E11, full insert sequence.
GenBankAP0046231e-95AP004623.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0705A05.
GenBankAP0054111e-95AP005411.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0044E16.
GenBankAP0149641e-95AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankAY3393751e-95AY339375.1 Oryza sativa (japonica cultivar-group) Ap22 mRNA, complete cds.
GenBankCP0126161e-95CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022680796.11e-132dehydration-responsive element-binding protein 2C-like
SwissprotQ84ZA17e-69DRE2C_ORYSJ; Dehydration-responsive element-binding protein 2C
TrEMBLK3ZBY60.0K3ZBY6_SETIT; Uncharacterized protein
STRINGSi024059m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55103454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.13e-26ERF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]