PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G064900.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Dof
Protein Properties Length: 344aa    MW: 34887.1 Da    PI: 8.9933
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G064900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof117.74.4e-3784142361
              zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                         e  lkcprC+stntkfCy+nnyslsqPr+fC+aCrryWt+GGalrnvPvGgg r++ k+
  Sevir.3G064900.2.p  84 EPGLKCPRCESTNTKFCYFNNYSLSQPRHFCRACRRYWTRGGALRNVPVGGGYRRHAKR 142
                         56789************************************************998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-3867141IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.65887141IPR003851Zinc finger, Dof-type
PfamPF027018.7E-3287141IPR003851Zinc finger, Dof-type
PROSITE patternPS01361089125IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MIFPPAFLDS SSWNDNQQQQ QAHHQVAGGG GGGGDGNHEL LQPSIMGGAL PEGAGGGGGA  60
GQVGPAKPMS MAERARLARI PLPEPGLKCP RCESTNTKFC YFNNYSLSQP RHFCRACRRY  120
WTRGGALRNV PVGGGYRRHA KRAKPKAAAA ASAATSTGTA SATAAAAAGL APAGSTSSAC  180
ATTNVPALQG PAMLGGNLSM LPPLLRLADF DAMSLGSSFS GMAGKPSLDA AGAYSVGGGS  240
GLEHQWRVQQ MQSFPFLHAM DQGPLGPPLA MTMAPGMFQL GLDSGDGRGG GGGSGEDGSG  300
ELHVMQAKRE GGYQARGMYG DHHFAAAGYA SYSNNAAAGN HLL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00407DAPTransfer from AT3G55370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G064900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0793561e-107AC079356.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0016H04, complete sequence.
GenBankAK1089331e-107AK108933.1 Oryza sativa Japonica Group cDNA clone:002-153-A09, full insert sequence.
GenBankAP0149611e-107AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankGQ1835521e-107GQ183552.1 Oryza sativa Japonica Group Dof-type zinc finger protein 25 gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012700432.10.0dof zinc finger protein DOF3.6 isoform X3
TrEMBLK3Z7M71e-169K3Z7M7_SETIT; Uncharacterized protein
STRINGSi022547m1e-170(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.11e-42OBF-binding protein 3