PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G063100.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB
Protein Properties Length: 293aa    MW: 32174.6 Da    PI: 8.2836
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G063100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.73.6e-154087148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd +lv  v+++G ++W+  a+  g++Rt+k+c++rw +yl
  Sevir.3G063100.1.p 40 KGPWTEEEDAQLVWFVRLFGERRWDFLAKVSGLRRTGKSCRLRWVNYL 87
                        79********************************************97 PP
2Myb_DNA-binding53.17.2e-1793136146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rgr T++E+ l++++++q+G++ W++Iar ++ gRt++++k++w++
  Sevir.3G063100.1.p  93 RGRITADEERLILELHAQYGSR-WSRIARSLP-GRTDNEIKNYWRT 136
                         899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.643587IPR017930Myb domain
SuperFamilySSF466898.17E-2937134IPR009057Homeodomain-like
SMARTSM007173.1E-133989IPR001005SANT/Myb domain
PfamPF002491.4E-134087IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-204194IPR009057Homeodomain-like
CDDcd001671.42E-94287No hitNo description
PROSITE profilePS5129423.31788142IPR017930Myb domain
SMARTSM007175.6E-1592140IPR001005SANT/Myb domain
PfamPF002491.5E-1493136IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-2395140IPR009057Homeodomain-like
CDDcd001679.15E-1197136No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MDHRSMAAAT MSMCCRNKQK KDGERSSSGG GGSKQAGMRK GPWTEEEDAQ LVWFVRLFGE  60
RRWDFLAKVS GLRRTGKSCR LRWVNYLHPG LRRGRITADE ERLILELHAQ YGSRWSRIAR  120
SLPGRTDNEI KNYWRTRTRK QKAAKTAASV SSSSTVTTTT ASCSGSRSSG CGTAASSSAV  180
TGSALRESGG GGGAEDDAEL DEASTTAASQ HHHHHQQQQQ EASSYTMDQF WNEIAAAEAA  240
ASYMVDGWVG ACHPAAAEPP VMPSSPVWEY CSDYSLWRID DEEYYKKMLD AS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-26381415107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G063100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7283601e-108KJ728360.1 Zea mays clone pUT6642 MYB transcription factor (MYB62) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681086.11e-108transcription factor MYB48
TrEMBLK3Z8F61e-156K3Z8F6_SETIT; Uncharacterized protein
STRINGSi022826m1e-157(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.12e-54myb domain protein 48