PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.3G059000.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

MYB_related

Protein Properties

Length: 307aa MW: 34966.9 Da PI: 4.8272

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.3G059000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.9	9.9e-13	139	182	4	47
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT eE+ +++++ +++G g Wk I+r + +++t+ q+ s+ qky Sevir.3G059000.1.p 139 WTIEEHRQFLCGLREYGRGKWKDISRDFVTTKTPVQVSSHAQKY 182 *******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.034	131	187	IPR017930	Myb domain
SuperFamily	SSF46689	6.96E-15	133	188	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.5E-9	135	184	IPR009057	Homeodomain-like
SMART	SM00717	2.3E-9	135	185	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	4.1E-13	136	185	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-9	139	182	IPR001005	SANT/Myb domain
CDD	cd00167	1.13E-7	139	183	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MDRKFNGEWS ACDIKIVKSL IASRNANNNY ADDLNKKHND IVNDIQARFP WKERDQVIEL 60 YVELVVEMIS PTQSGNQFVV ATNNSVNDNF GIPVEDPNMD TLYAYMSNKT PESMRMVVEA 120 PQSQAIIPQQ ERQQKGRFWT IEEHRQFLCG LREYGRGKWK DISRDFVTTK TPVQVSSHAQ 180 KYFRRLERTS EKQRYSINDV GLYDAEPWVL NNSSSWEALA FTGGAYNPNF YGTGRQLSTV 240 NNFSQVWPPF LYGADQASSS QATTWAGQQM GATALALEGA GSQMAWTGDQ QGDFLPEQWM 300 DMDKEY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.3G059000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022680780.1	0.0	transcription factor SRM1
TrEMBL	K3ZF27	0.0	K3ZF27_SETIT; Uncharacterized protein
STRING	Si025176m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP842	30	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38090.1	2e-22	MYB family protein

Link Out ? help Back to Top
Phytozome	Sevir.3G059000.1.p