PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G055300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 526aa    MW: 54326.5 Da    PI: 7.0241
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G055300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.92.8e-30254312259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed+ v+++tYeg+Hnh+
  Sevir.3G055300.1.p 254 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAtGCPVRKQVQRCAEDKAVLITTYEGTHNHQ 312
                         7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-33238314IPR003657WRKY domain
SuperFamilySSF1182901.05E-27246314IPR003657WRKY domain
PROSITE profilePS5081129.321248314IPR003657WRKY domain
SMARTSM007741.7E-36253313IPR003657WRKY domain
PfamPF031061.5E-26255312IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MDLVPKQEQH KEEEDKEEAM ILAEHGDQAF GHAGGGRRRS EIKEVDFFST GGAHRRNDDD  60
GNGRDGRSRE AGALGRGNTT VNTALDLLTT AAAATPVNAG EGAAAGAASD HNKQMAVATV  120
EGELRQAGEE NRRLRRMLDD LTRSHSALYH QLIQAQQHQQ ASGSANSMLP ATMPAGVQFM  180
DPRMAPAIRA GAPASFDGDR GDSDGGSGSG GEADQNKQDG TAGTPERGEN AAAEAPLRRA  240
RVSVRARSEA PMISDGCQWR KYGQKMAKGN PCPRAYYRCT MATGCPVRKQ VQRCAEDKAV  300
LITTYEGTHN HQLPPAAAAM AKTTSAAAAM LLSGPAASRD ALFAGHHVAA TAPAPLFQSY  360
PYASAAMGAT LSASAPFPTI TLDLTHSPPA SAAGLHLQHR PPALPAMPFP MYGFPAAAHR  420
PAVPLLPQPP TAVSLGMMDG RNRAALETMT AAITSDPNFT TALAAALSTI MGGGAEAAPR  480
GGAGADAGDG NNGGSGTEPP ATAAAAGARE TALHALLQRL HDSRQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-22240316176WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G055300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012699836.10.0probable WRKY transcription factor 47
TrEMBLA0A368QBQ30.0A0A368QBQ3_SETIT; Uncharacterized protein
STRINGSi022468m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43583260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.12e-52WRKY family protein