PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.3G048600.8.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

MYB_related

Protein Properties

Length: 1266aa MW: 137770 Da PI: 6.2776

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.3G048600.8.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.7	7.2e-10	404	446	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE e++ + ++++G++ +++I++ + ++t +c+++++k+ Sevir.3G048600.8.p 404 PWTQEEKEIFMEMFAKFGKD-FSKISSFLM-HKTTADCVEFYYKH 446 8***************99.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.5E-14	390	449	IPR009057	Homeodomain-like
PROSITE profile	PS51293	15.475	400	451	IPR017884	SANT domain
SMART	SM00717	3.1E-9	401	449	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.8E-8	402	448	IPR009057	Homeodomain-like
Pfam	PF00249	1.2E-7	403	446	IPR001005	SANT/Myb domain
PROSITE profile	PS51293	12.354	610	661	IPR017884	SANT domain
SMART	SM00717	3.5E-5	611	659	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.48E-8	614	661	IPR009057	Homeodomain-like
CDD	cd00167	6.22E-4	615	653	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1266 aa Download sequence Send to blast
MLADLLQHDD SCSGDSKGPT STSKLLLLKE SISKEIEKTE LEIDLLEGEL KSVNTEAGTA 60 VEGSPTGVTY AENLSPSSGT SKVPESAEIS QASHVMKEPG ELIPSPKPPV VQDADVKGAD 120 MMEIEPAPVR NAKTLSSEES AVSPGVAEGP VCAAADLSPL KASERAGSQN DMHNDRLETS 180 SCHVNADSIK TEISDDIPVT QCSDHDHKYS LFGSVTSANN NIAKVMNESL FKSLPADTPH 240 LDLLASSHLL SQRKNDHHIR ERLGVCKNRL RLKEQILTLK FKAYRHLWKE DLRLLSAKKQ 300 RPKSNKRIDQ SNRTSHIGSQ RQRSSNRSRL AMPAGNLSTF STPEMSDVAS KLFSEFQIKR 360 CRNYLKMPAL IIDEREKERS RFVSKNGFVD DPVLVEKERV MINPWTQEEK EIFMEMFAKF 420 GKDFSKISSF LMHKTTADCV EFYYKHHKSD SFREVKKLLD LRQQQPASNF LGAKSGKKWN 480 PEANAASLDM LGVASVVAAH GLEYANRVEK ISAKSLIRTA YGSNVSFAAK KSSDMECIDN 540 VPLHERESVA ADVLAGICST LSPEGMGSCI TSSADPGQKI SMTRMEHGLA PEIDRSIDEE 600 DTLSDQECEV DPVDWNDDEK SVFIEAMNNY GKDFARISSC VKSKSYEQCK VFFSKARKSL 660 GLDLIHQGAA DVSMPTSDTN GGRSDTDEAC AAEMDSAICS TQSCSEIEKD VCPTEKAIGG 720 IITKQPELNI SNGFDVVDGK TEEDEKKADK NCSIVDHGRF NEDTHQVACG TIDINCPEST 780 EKLQGKDDVV DQVNMQNNSA ISSSPEQAMA AHPEVRSSLH SVEVLHQTNK APLGSGTDAS 840 QMEECSNQAL DNKLRKAGNS GASACIASDI STKDNVHFAN MTGASTISPA FPPSYKHSVP 900 ADMPPTKPKP LVTPLTPKDL MPVQFSSAVP DPTVICFDGI ASITMPNFDD SGNRVSSALG 960 AKDMSKYPAF KDPTGNQHDA LFRNVDGYTN HLTTKLPFFS ERTASGTVST SQTDRFTLTK 1020 FQNGRSSSLG LPNTSDGIQW ARKHEEVLQG SLRSCSHNTS SEGDEQQKRP GDVKLFGKIL 1080 SHQSSLQSPV PPCNGNKSKP PSPKIDISSV RSLNNPRDRV VCSSRPGITH LGLEERTAKS 1140 YGHLDGSTTQ PEPLLMMAKC QSLAGVPFYS AKNGTVGVFS DYQQPSIQPH QSDPKRLERF 1200 SDPQKRNGVE FISGFQQPSK ISRFGGAGIL VSGVSDPVAA LKAQYGPGSK VMGSDVDPWK 1260 DIGSR*

Sequence ? help Back to Top

Protein Sequence Length: 1266 aa Download sequence Send to blast

MLADLLQHDD SCSGDSKGPT STSKLLLLKE SISKEIEKTE LEIDLLEGEL KSVNTEAGTA  60
VEGSPTGVTY AENLSPSSGT SKVPESAEIS QASHVMKEPG ELIPSPKPPV VQDADVKGAD  120
MMEIEPAPVR NAKTLSSEES AVSPGVAEGP VCAAADLSPL KASERAGSQN DMHNDRLETS  180
SCHVNADSIK TEISDDIPVT QCSDHDHKYS LFGSVTSANN NIAKVMNESL FKSLPADTPH  240
LDLLASSHLL SQRKNDHHIR ERLGVCKNRL RLKEQILTLK FKAYRHLWKE DLRLLSAKKQ  300
RPKSNKRIDQ SNRTSHIGSQ RQRSSNRSRL AMPAGNLSTF STPEMSDVAS KLFSEFQIKR  360
CRNYLKMPAL IIDEREKERS RFVSKNGFVD DPVLVEKERV MINPWTQEEK EIFMEMFAKF  420
GKDFSKISSF LMHKTTADCV EFYYKHHKSD SFREVKKLLD LRQQQPASNF LGAKSGKKWN  480
PEANAASLDM LGVASVVAAH GLEYANRVEK ISAKSLIRTA YGSNVSFAAK KSSDMECIDN  540
VPLHERESVA ADVLAGICST LSPEGMGSCI TSSADPGQKI SMTRMEHGLA PEIDRSIDEE  600
DTLSDQECEV DPVDWNDDEK SVFIEAMNNY GKDFARISSC VKSKSYEQCK VFFSKARKSL  660
GLDLIHQGAA DVSMPTSDTN GGRSDTDEAC AAEMDSAICS TQSCSEIEKD VCPTEKAIGG  720
IITKQPELNI SNGFDVVDGK TEEDEKKADK NCSIVDHGRF NEDTHQVACG TIDINCPEST  780
EKLQGKDDVV DQVNMQNNSA ISSSPEQAMA AHPEVRSSLH SVEVLHQTNK APLGSGTDAS  840
QMEECSNQAL DNKLRKAGNS GASACIASDI STKDNVHFAN MTGASTISPA FPPSYKHSVP  900
ADMPPTKPKP LVTPLTPKDL MPVQFSSAVP DPTVICFDGI ASITMPNFDD SGNRVSSALG  960
AKDMSKYPAF KDPTGNQHDA LFRNVDGYTN HLTTKLPFFS ERTASGTVST SQTDRFTLTK  1020
FQNGRSSSLG LPNTSDGIQW ARKHEEVLQG SLRSCSHNTS SEGDEQQKRP GDVKLFGKIL  1080
SHQSSLQSPV PPCNGNKSKP PSPKIDISSV RSLNNPRDRV VCSSRPGITH LGLEERTAKS  1140
YGHLDGSTTQ PEPLLMMAKC QSLAGVPFYS AKNGTVGVFS DYQQPSIQPH QSDPKRLERF  1200
SDPQKRNGVE FISGFQQPSK ISRFGGAGIL VSGVSDPVAA LKAQYGPGSK VMGSDVDPWK  1260
DIGSR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	5e-16	362	453	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	5e-16	362	453	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.3G048600.8.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004960366.1	0.0	uncharacterized protein LOC101781442 isoform X1
Refseq	XP_004960367.1	0.0	uncharacterized protein LOC101781442 isoform X1
Refseq	XP_012700232.1	0.0	uncharacterized protein LOC101781442 isoform X1
TrEMBL	K3Z335	0.0	K3Z335_SETIT; Uncharacterized protein
STRING	Si020953m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	3e-83	MYB family protein

Link Out ? help Back to Top
Phytozome	Sevir.3G048600.8.p