PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.3G048600.3.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

MYB_related

Protein Properties

Length: 1708aa MW: 183941 Da PI: 6.3337

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.3G048600.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.2	1e-09	846	888	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE e++ + ++++G++ +++I++ + ++t +c+++++k+ Sevir.3G048600.3.p 846 PWTQEEKEIFMEMFAKFGKD-FSKISSFLM-HKTTADCVEFYYKH 888 8***************99.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.17E-14	832	891	IPR009057	Homeodomain-like
PROSITE profile	PS51293	15.475	842	893	IPR017884	SANT domain
SMART	SM00717	3.1E-9	843	891	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-7	844	890	IPR009057	Homeodomain-like
Pfam	PF00249	1.7E-7	845	888	IPR001005	SANT/Myb domain
PROSITE profile	PS51293	12.354	1052	1103	IPR017884	SANT domain
SMART	SM00717	3.5E-5	1053	1101	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.11E-8	1056	1103	IPR009057	Homeodomain-like
CDD	cd00167	8.66E-4	1057	1095	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1708 aa Download sequence Send to blast
MPPPPPDRRD YLYREGRRHD GGGAGDPLLP PAPTPPRWRD SPYHPPPPPP LRDHARPSPR 60 RAPSSASSGY YRQGGGAYDR SYPDEPPLGY TPSRSDRYWV EDDGGGYKSF GRYGGGGGGR 120 RDGREVRGSY RRSPFRGYGS DFSRNHPEQP PPPPPRRSPL RSVAVPICYD PPGNRVDRGD 180 RDNLPRVTPW RRRESRSEAA DAAGAGPVSL GQTTRPASSE KEASAQPPAG SAPLGTEDEA 240 PRKKARLGWG QGLAKYEKQK VHGPADPAEA VADGSPAEAE QKTAFPVPVL PAPPASAPAP 300 EPPAAPAPPP PAAPAPPPPA VPAPPPPAAP APLPEPPAEP VPEPPAAPAP VLVPVPAPAP 360 APVPAPAPAP VPAPAFCTSP VDTPSSAPPY CTSAPEDKSC EQTGTVTNPT KDVPEAADKA 420 VNNEFSINLD QLGDDPINSL ANMLADLLQH DDSCSGDSKG PTSTSKLLLL KESISKEIEK 480 TELEIDLLEG ELKSVNTEAG TAVEGSPTGV TYAENLSPSS GTSKVPESAE ISQASHVMKE 540 PGELIPSPKP PVVQDADVKG ADMMEIEPAP VRNAKTLSSE ESAVSPGVAE GPVCAAADLS 600 PLKASERAGS QNDMHNDRLE TSSCHVNADS IKTEISDDIP VTQCSDHDHK YSLFGSVTSA 660 NNNIAKVMNE SLFKSLPADT PHLDLLASSH LLSQRKNDHH IRERLGVCKN RLRLKEQILT 720 LKFKAYRHLW KEDLRLLSAK KQRPKSNKRI DQSNRTSHIG SQRQRSSNRS RLAMPAGNLS 780 TFSTPEMSDV ASKLFSEFQI KRCRNYLKMP ALIIDEREKE RSRFVSKNGF VDDPVLVEKE 840 RVMINPWTQE EKEIFMEMFA KFGKDFSKIS SFLMHKTTAD CVEFYYKHHK SDSFREVKKL 900 LDLRQQQPAS NFLGAKSGKK WNPEANAASL DMLGVASVVA AHGLEYANRV EKISAKSLIR 960 TAYGSNVSFA AKKSSDMECI DNVPLHERES VAADVLAGIC STLSPEGMGS CITSSADPGQ 1020 KISMTRMEHG LAPEIDRSID EEDTLSDQEC EVDPVDWNDD EKSVFIEAMN NYGKDFARIS 1080 SCVKSKSYEQ CKVFFSKARK SLGLDLIHQG AADVSMPTSD TNGGRSDTDE ACAAEMDSAI 1140 CSTQSCSEIE KDVCPTEKAI GGIITKQPEL NISNGFDVVD GKTEEDEKKA DKNCSIVDHG 1200 RFNEDTHQVA CGTIDINCPE STEKLQGKDD VVDQVNMQNN SAISSSPEQA MAAHPEVRSS 1260 LHSVEVLHQT NKAPLGSGTD ASQMEECSNQ ALDNKLRKAG NSGASACIAS DISTKDNVHF 1320 ANMTGASTIS PAFPPSYKHS VPADMPPTKP KPLVTPLTPK DLMPVQFSSA VPDPTVICFD 1380 GIASITMPNF DDSGNRVSSA LGAKDMSKYP AFKDPTGNQH DALFRNVDGY TNHLTTKLPF 1440 FSERTASGTV STSQTDRFTL TKFQNGRSSS LGLPNTSDGI QWARKHEEVL QGSLRSCSHN 1500 TSSEGDEQQK RPGDVKLFGK ILSHQSSLQS PVPPCNGNKS KPPSPKIDIS SVRSLNNPRD 1560 RVVCSSRPGI THLGLEERTA KSYGHLDGST TQPEPLLMMA KCQSLAGVPF YSAKNGTVGV 1620 FSDYQQPSIQ PHQSDPKRLE RFSDPQKRNG VEFISGFQQP SKISRFGGAG ILVSGVSDPV 1680 AALKAQYGPG SKVMGSDVDP WKDIGSR*

Sequence ? help Back to Top

Protein Sequence Length: 1708 aa Download sequence Send to blast

MPPPPPDRRD YLYREGRRHD GGGAGDPLLP PAPTPPRWRD SPYHPPPPPP LRDHARPSPR  60
RAPSSASSGY YRQGGGAYDR SYPDEPPLGY TPSRSDRYWV EDDGGGYKSF GRYGGGGGGR  120
RDGREVRGSY RRSPFRGYGS DFSRNHPEQP PPPPPRRSPL RSVAVPICYD PPGNRVDRGD  180
RDNLPRVTPW RRRESRSEAA DAAGAGPVSL GQTTRPASSE KEASAQPPAG SAPLGTEDEA  240
PRKKARLGWG QGLAKYEKQK VHGPADPAEA VADGSPAEAE QKTAFPVPVL PAPPASAPAP  300
EPPAAPAPPP PAAPAPPPPA VPAPPPPAAP APLPEPPAEP VPEPPAAPAP VLVPVPAPAP  360
APVPAPAPAP VPAPAFCTSP VDTPSSAPPY CTSAPEDKSC EQTGTVTNPT KDVPEAADKA  420
VNNEFSINLD QLGDDPINSL ANMLADLLQH DDSCSGDSKG PTSTSKLLLL KESISKEIEK  480
TELEIDLLEG ELKSVNTEAG TAVEGSPTGV TYAENLSPSS GTSKVPESAE ISQASHVMKE  540
PGELIPSPKP PVVQDADVKG ADMMEIEPAP VRNAKTLSSE ESAVSPGVAE GPVCAAADLS  600
PLKASERAGS QNDMHNDRLE TSSCHVNADS IKTEISDDIP VTQCSDHDHK YSLFGSVTSA  660
NNNIAKVMNE SLFKSLPADT PHLDLLASSH LLSQRKNDHH IRERLGVCKN RLRLKEQILT  720
LKFKAYRHLW KEDLRLLSAK KQRPKSNKRI DQSNRTSHIG SQRQRSSNRS RLAMPAGNLS  780
TFSTPEMSDV ASKLFSEFQI KRCRNYLKMP ALIIDEREKE RSRFVSKNGF VDDPVLVEKE  840
RVMINPWTQE EKEIFMEMFA KFGKDFSKIS SFLMHKTTAD CVEFYYKHHK SDSFREVKKL  900
LDLRQQQPAS NFLGAKSGKK WNPEANAASL DMLGVASVVA AHGLEYANRV EKISAKSLIR  960
TAYGSNVSFA AKKSSDMECI DNVPLHERES VAADVLAGIC STLSPEGMGS CITSSADPGQ  1020
KISMTRMEHG LAPEIDRSID EEDTLSDQEC EVDPVDWNDD EKSVFIEAMN NYGKDFARIS  1080
SCVKSKSYEQ CKVFFSKARK SLGLDLIHQG AADVSMPTSD TNGGRSDTDE ACAAEMDSAI  1140
CSTQSCSEIE KDVCPTEKAI GGIITKQPEL NISNGFDVVD GKTEEDEKKA DKNCSIVDHG  1200
RFNEDTHQVA CGTIDINCPE STEKLQGKDD VVDQVNMQNN SAISSSPEQA MAAHPEVRSS  1260
LHSVEVLHQT NKAPLGSGTD ASQMEECSNQ ALDNKLRKAG NSGASACIAS DISTKDNVHF  1320
ANMTGASTIS PAFPPSYKHS VPADMPPTKP KPLVTPLTPK DLMPVQFSSA VPDPTVICFD  1380
GIASITMPNF DDSGNRVSSA LGAKDMSKYP AFKDPTGNQH DALFRNVDGY TNHLTTKLPF  1440
FSERTASGTV STSQTDRFTL TKFQNGRSSS LGLPNTSDGI QWARKHEEVL QGSLRSCSHN  1500
TSSEGDEQQK RPGDVKLFGK ILSHQSSLQS PVPPCNGNKS KPPSPKIDIS SVRSLNNPRD  1560
RVVCSSRPGI THLGLEERTA KSYGHLDGST TQPEPLLMMA KCQSLAGVPF YSAKNGTVGV  1620
FSDYQQPSIQ PHQSDPKRLE RFSDPQKRNG VEFISGFQQP SKISRFGGAG ILVSGVSDPV  1680
AALKAQYGPG SKVMGSDVDP WKDIGSR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	6e-16	804	895	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	6e-16	804	895	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.3G048600.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025807435.1	0.0	uncharacterized protein LOC112885940 isoform X1
Refseq	XP_025807437.1	0.0	uncharacterized protein LOC112885940 isoform X1
Refseq	XP_025807438.1	0.0	uncharacterized protein LOC112885940 isoform X1
TrEMBL	A0A3L6STJ3	0.0	A0A3L6STJ3_PANMI; Uncharacterized protein
STRING	Sb09g002290.1	0.0	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	3e-83	MYB family protein

Link Out ? help Back to Top
Phytozome	Sevir.3G048600.3.p