PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.3G048600.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 1708aa MW: 183941 Da PI: 6.3337 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.2 | 1e-09 | 846 | 888 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE e++ + ++++G++ +++I++ + ++t +c+++++k+ Sevir.3G048600.2.p 846 PWTQEEKEIFMEMFAKFGKD-FSKISSFLM-HKTTADCVEFYYKH 888 8*****************99.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.17E-14 | 832 | 891 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 15.475 | 842 | 893 | IPR017884 | SANT domain |
SMART | SM00717 | 3.1E-9 | 843 | 891 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-7 | 844 | 890 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.7E-7 | 845 | 888 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51293 | 12.354 | 1052 | 1103 | IPR017884 | SANT domain |
SMART | SM00717 | 3.5E-5 | 1053 | 1101 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.11E-8 | 1056 | 1103 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.66E-4 | 1057 | 1095 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1708 aa Download sequence Send to blast |
MPPPPPDRRD YLYREGRRHD GGGAGDPLLP PAPTPPRWRD SPYHPPPPPP LRDHARPSPR 60 RAPSSASSGY YRQGGGAYDR SYPDEPPLGY TPSRSDRYWV EDDGGGYKSF GRYGGGGGGR 120 RDGREVRGSY RRSPFRGYGS DFSRNHPEQP PPPPPRRSPL RSVAVPICYD PPGNRVDRGD 180 RDNLPRVTPW RRRESRSEAA DAAGAGPVSL GQTTRPASSE KEASAQPPAG SAPLGTEDEA 240 PRKKARLGWG QGLAKYEKQK VHGPADPAEA VADGSPAEAE QKTAFPVPVL PAPPASAPAP 300 EPPAAPAPPP PAAPAPPPPA VPAPPPPAAP APLPEPPAEP VPEPPAAPAP VLVPVPAPAP 360 APVPAPAPAP VPAPAFCTSP VDTPSSAPPY CTSAPEDKSC EQTGTVTNPT KDVPEAADKA 420 VNNEFSINLD QLGDDPINSL ANMLADLLQH DDSCSGDSKG PTSTSKLLLL KESISKEIEK 480 TELEIDLLEG ELKSVNTEAG TAVEGSPTGV TYAENLSPSS GTSKVPESAE ISQASHVMKE 540 PGELIPSPKP PVVQDADVKG ADMMEIEPAP VRNAKTLSSE ESAVSPGVAE GPVCAAADLS 600 PLKASERAGS QNDMHNDRLE TSSCHVNADS IKTEISDDIP VTQCSDHDHK YSLFGSVTSA 660 NNNIAKVMNE SLFKSLPADT PHLDLLASSH LLSQRKNDHH IRERLGVCKN RLRLKEQILT 720 LKFKAYRHLW KEDLRLLSAK KQRPKSNKRI DQSNRTSHIG SQRQRSSNRS RLAMPAGNLS 780 TFSTPEMSDV ASKLFSEFQI KRCRNYLKMP ALIIDEREKE RSRFVSKNGF VDDPVLVEKE 840 RVMINPWTQE EKEIFMEMFA KFGKDFSKIS SFLMHKTTAD CVEFYYKHHK SDSFREVKKL 900 LDLRQQQPAS NFLGAKSGKK WNPEANAASL DMLGVASVVA AHGLEYANRV EKISAKSLIR 960 TAYGSNVSFA AKKSSDMECI DNVPLHERES VAADVLAGIC STLSPEGMGS CITSSADPGQ 1020 KISMTRMEHG LAPEIDRSID EEDTLSDQEC EVDPVDWNDD EKSVFIEAMN NYGKDFARIS 1080 SCVKSKSYEQ CKVFFSKARK SLGLDLIHQG AADVSMPTSD TNGGRSDTDE ACAAEMDSAI 1140 CSTQSCSEIE KDVCPTEKAI GGIITKQPEL NISNGFDVVD GKTEEDEKKA DKNCSIVDHG 1200 RFNEDTHQVA CGTIDINCPE STEKLQGKDD VVDQVNMQNN SAISSSPEQA MAAHPEVRSS 1260 LHSVEVLHQT NKAPLGSGTD ASQMEECSNQ ALDNKLRKAG NSGASACIAS DISTKDNVHF 1320 ANMTGASTIS PAFPPSYKHS VPADMPPTKP KPLVTPLTPK DLMPVQFSSA VPDPTVICFD 1380 GIASITMPNF DDSGNRVSSA LGAKDMSKYP AFKDPTGNQH DALFRNVDGY TNHLTTKLPF 1440 FSERTASGTV STSQTDRFTL TKFQNGRSSS LGLPNTSDGI QWARKHEEVL QGSLRSCSHN 1500 TSSEGDEQQK RPGDVKLFGK ILSHQSSLQS PVPPCNGNKS KPPSPKIDIS SVRSLNNPRD 1560 RVVCSSRPGI THLGLEERTA KSYGHLDGST TQPEPLLMMA KCQSLAGVPF YSAKNGTVGV 1620 FSDYQQPSIQ PHQSDPKRLE RFSDPQKRNG VEFISGFQQP SKISRFGGAG ILVSGVSDPV 1680 AALKAQYGPG SKVMGSDVDP WKDIGSR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4a69_C | 6e-16 | 804 | 895 | 4 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
4a69_D | 6e-16 | 804 | 895 | 4 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.3G048600.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025807435.1 | 0.0 | uncharacterized protein LOC112885940 isoform X1 | ||||
Refseq | XP_025807437.1 | 0.0 | uncharacterized protein LOC112885940 isoform X1 | ||||
Refseq | XP_025807438.1 | 0.0 | uncharacterized protein LOC112885940 isoform X1 | ||||
TrEMBL | A0A3L6STJ3 | 0.0 | A0A3L6STJ3_PANMI; Uncharacterized protein | ||||
STRING | Sb09g002290.1 | 0.0 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52250.1 | 3e-83 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.3G048600.2.p |