PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G044600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WOX
Protein Properties Length: 276aa    MW: 28732.6 Da    PI: 7.8301
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G044600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.51.5e-202483357
                        --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                        +R+++t+eql +Lee+++   r+psa+++++++++l    +++ ++V++WFqN++a++++
  Sevir.3G044600.1.p 24 TRWCPTPEQLMILEEMYRGgLRTPSASQIQQITAHLacygRIEGKNVFYWFQNHKARDRQ 83
                        8*****************99*************************************996 PP
2Wus_type_Homeobox117.46.6e-382384364
   Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                        +tRW+PtpeQ++iLee+y+ GlrtP++++iq+ita+L+ yG+ie+kNVfyWFQN+kaR+rqk
  Sevir.3G044600.1.p 23 STRWCPTPEQLMILEEMYRGGLRTPSASQIQQITAHLACYGRIEGKNVFYWFQNHKARDRQK 84
                        79***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003892.4E-42188IPR001356Homeobox domain
CDDcd000861.57E-52484No hitNo description
SuperFamilySSF466891.33E-102484IPR009057Homeodomain-like
PfamPF000463.4E-182483IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.3E-72583IPR009057Homeodomain-like
PROSITE profilePS500719.9442984IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009908Biological Processflower development
GO:0009943Biological Processadaxial/abaxial axis specification
GO:0009947Biological Processcentrolateral axis specification
GO:0010865Biological Processstipule development
GO:0048513Biological Processanimal organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MPSQQGQTQA QAQAAQQPVV AGSTRWCPTP EQLMILEEMY RGGLRTPSAS QIQQITAHLA  60
CYGRIEGKNV FYWFQNHKAR DRQKLRRRLC MSHHLLSCAQ YYAAAHHGHH GFLAAAPPAL  120
PAAPYGGCGV FDQTAAGQLL SPTSPTPAAA AAAAAAAAAY GYYYPATAAF APAPPSRCVG  180
AATPPSPTQL FHYQAGGGGG IAPVEALGRP EYSLGKLDNF GVALDDVVVS SAAAAAADMA  240
PPGFEVAPPP AAFCRPLKTL DLFPGGLKEE QHDVA*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G044600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0401841e-128BT040184.1 Zea mays full-length cDNA clone ZM_BFc0070F13 mRNA, complete cds.
GenBankKJ7269461e-128KJ726946.1 Zea mays clone pUT3492 HB transcription factor (HB82) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960326.11e-148putative WUSCHEL-related homeobox 2
SwissprotA2XZR35e-69WOX2_ORYSI; Putative WUSCHEL-related homeobox 2
TrEMBLK3Z8S41e-147K3Z8S4_SETIT; Uncharacterized protein
STRINGSi022944m1e-148(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21773897
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.17e-40WOX family protein