PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G030000.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C3H
Protein Properties Length: 230aa    MW: 23734.8 Da    PI: 9.3352
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G030000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.44.4e-073257227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                        kt+ C  +     Ck+G++C+FaHg+
  Sevir.3G030000.2.p 32 KTRMCTKYNTVEGCKFGEKCHFAHGE 57
                        8999999999999***********96 PP
2zf-CCCH38.61.8e-12196221127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ykt+lC +f + GtC +GdrC+FaHg+
  Sevir.3G030000.2.p 196 YKTKLCENFVK-GTCTFGDRCHFAHGE 221
                         9**********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.393057IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.453058IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-83160IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.2E-133261IPR000571Zinc finger, CCCH-type
PfamPF146080.0293656No hitNo description
SuperFamilySSF547916.23E-1494169IPR004088K Homology domain, type 1
SMARTSM003221.6E-998168IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.101.9E-1498168IPR004088K Homology domain, type 1
PROSITE profilePS5008413.75499163IPR004088K Homology domain, type 1
CDDcd001052.22E-13101163No hitNo description
PfamPF000134.7E-10101164IPR004088K Homology domain, type 1
SuperFamilySSF902291.16E-9194225IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-15194225IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-8195221IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.488195222IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-10196221IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MLNLGSPAVS APARASVDHA AVANSHPAST GKTRMCTKYN TVEGCKFGEK CHFAHGEREL  60
GRPAYMSHEG PPMGGRYGGR PEPLPPVAMG PPAGNFGASA TAKISVDASL AGGIIGKGGV  120
NTKQICRVAG VKLSIRDHES DPNLKNIELE GNFDQIKQAS NMVSDLIASI SASMPPKAPP  180
APAGGRGGAP GGRSNYKTKL CENFVKGTCT FGDRCHFAHG ENEQRRGAA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G030000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960205.11e-166zinc finger CCCH domain-containing protein 31
SwissprotQ7XPK11e-111C3H31_ORYSJ; Zinc finger CCCH domain-containing protein 31
TrEMBLK3Z8B51e-164K3Z8B5_SETIT; Uncharacterized protein
TrEMBLK3Z9C31e-165K3Z9C3_SETIT; Uncharacterized protein
STRINGSi022785m1e-165(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.19e-51C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]