PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G028500.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WOX
Protein Properties Length: 325aa    MW: 33378 Da    PI: 8.4725
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G028500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.74.7e-193393357
                        --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                        +R+t+t+eq+++L+el++    r p+ e+++++++ l    +++ ++V++WFqN++a+e++
  Sevir.3G028500.1.p 33 SRWTPTPEQIRILKELYYGcgIRSPNSEQIQRITAMLrqhgKIEGKNVFYWFQNHKARERQ 93
                        7*****************7568*************************************97 PP
2Wus_type_Homeobox114.64.7e-373295365
   Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                         +RWtPtpeQi+iL+ely+ +G+r+Pn+e+iqrita+L+++Gkie+kNVfyWFQN+kaRerqk+
  Sevir.3G028500.1.p 32 GSRWTPTPEQIRILKELYYgCGIRSPNSEQIQRITAMLRQHGKIEGKNVFYWFQNHKARERQKR 95
                        68****************999*****************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.7822894IPR001356Homeobox domain
SuperFamilySSF466892.31E-112897IPR009057Homeodomain-like
SMARTSM003891.3E-53098IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.8E-73393IPR009057Homeodomain-like
PfamPF000466.3E-173393IPR001356Homeobox domain
CDDcd000862.75E-63495No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MAANVGGKSV VGGGAGAGGT TGGGAAACRA SGSRWTPTPE QIRILKELYY GCGIRSPNSE  60
QIQRITAMLR QHGKIEGKNV FYWFQNHKAR ERQKRRLTNL DVNVPAAAAA DVGHLGVLSL  120
SSPSGAAPPS SPLGLYPGNG GASALQLDTS SDWGSTTAVA TETCFLQDYM GVMRSTAGHH  180
DSSAGGAAAS PWACFSSPDS WAAAPAMTRA PETLPLFPTG DNVQPPRPRR GAPAGDAIRG  240
GGGGSGYPTL PFWGAAATAA TATTTTTSVT IQQQHHQLLQ LQDQYSFYTT NSQPPSSHDA  300
SSAATASLEL SLSSWCSPYP AGTM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1513GGKSVVGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor required for the formation and development of tiller buds and panicles (PubMed:25697101). Required for tiller formation and female sterility (PubMed:27194802). Required for the early developmental stages of axillary meristem formation (PubMed:25841039). Plays a role in maintaining the axillary premeristem zone and in promoting the formation of the axillary meristem by promoting OSH1 expression (PubMed:25841039). Does not seem to be involved in maintenance of the shoot apical meristem (SAM) (PubMed:25841039). {ECO:0000269|PubMed:25697101, ECO:0000269|PubMed:25841039, ECO:0000269|PubMed:27194802}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G028500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by the cytokinin 6-benzylaminopurine. {ECO:0000269|PubMed:17351053}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM2347451e-137AM234745.1 Zea mays mRNA for WUS2 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022680535.10.0WUSCHEL-related homeobox 1B
SwissprotQ7XM132e-69WOX1_ORYSJ; WUSCHEL-related homeobox 1
TrEMBLK3ZCE40.0K3ZCE4_SETIT; Uncharacterized protein
STRINGSi024219m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124653136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.13e-31WOX family protein
Publications ? help Back to Top
  1. Lu Z, et al.
    MONOCULM 3, an ortholog of WUSCHEL in rice, is required for tiller bud formation.
    J Genet Genomics, 2015. 42(2): p. 71-8
    [PMID:25697101]
  2. Tanaka W, et al.
    Axillary Meristem Formation in Rice Requires the WUSCHEL Ortholog TILLERS ABSENT1.
    Plant Cell, 2015. 27(4): p. 1173-84
    [PMID:25841039]
  3. Mjomba FM, et al.
    Homeobox Is Pivotal for OsWUS Controlling Tiller Development and Female Fertility in Rice.
    G3 (Bethesda), 2016. 6(7): p. 2013-21
    [PMID:27194802]