PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.3G028200.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | C3H | ||||||||
Protein Properties | Length: 399aa MW: 43420 Da PI: 6.5133 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.9 | 2.7e-06 | 350 | 373 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 t++C +f C+ G++C+F H+ Sevir.3G028200.2.p 350 TKPCAYFNSARGCRNGANCTFLHD 373 899********************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.657 | 347 | 375 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.84E-5 | 349 | 376 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-6 | 350 | 375 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.1E-5 | 350 | 373 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 399 aa Download sequence Send to blast |
MMGSRRPRRV SWATGANLCK VRLFLSEDSP SQAGLRPQDN LQAKGSWLMH AAGPSSDDSL 60 PPGFESLQPT NDHKIDISQI PLIRWRCPPQ ILYNPDWLVV AGEESVEAAL QNERIFGALE 120 AIYPRSSNIP PNPFVSPDVK DSYFDDSRTQ LVPLIPVEED DVSDQLEEPP AGPPNSYHQS 180 DKYDSAIVRV PQGSDAPFTT AQQHPNGSIN TASAAGISTD PDAVAAAIMQ SNQMGNMIDQ 240 DLLIKILSDP AQLERLMKEY GTLKHEQPTN SPVPAPMLRG PPPQMTASIP VPFPDHVTTF 300 HNINPTLPPP PPVMNRLPPA IPSVGMNPPA SSSQAVNFSN IPGREKQRPT KPCAYFNSAR 360 GCRNGANCTF LHDVSAARKE QPKGSKRIKL DSRIAGRY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.3G028200.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT060814 | 0.0 | BT060814.1 Zea mays full-length cDNA clone ZM_BFb0053I10 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004960188.1 | 0.0 | zinc finger CCCH domain-containing protein 30 | ||||
Swissprot | Q7XM16 | 1e-136 | C3H30_ORYSJ; Zinc finger CCCH domain-containing protein 30 | ||||
TrEMBL | A0A368QB42 | 0.0 | A0A368QB42_SETIT; Uncharacterized protein | ||||
STRING | Si024685m | 0.0 | (Setaria italica) |
Link Out ? help Back to Top | |
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Phytozome | Sevir.3G028200.2.p |
Publications ? help Back to Top | |||
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