PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.3G028200.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

C3H

Protein Properties

Length: 451aa MW: 49227.4 Da PI: 6.8846

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.3G028200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.7	3.2e-06	402	425	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 t++C +f C+ G++C+F H+ Sevir.3G028200.1.p 402 TKPCAYFNSARGCRNGANCTFLHD 425 899********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.657	399	427	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.63E-5	401	428	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.1E-4	402	425	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.0E-6	402	427	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence Send to blast
MMGSRRPRRV SWATGANLCK VRLFLSEDSP SQAGLRPQDN LQAKGSWLMH AAGPSSDDSL 60 PPGFESLQPT NDHKIDISQI PLIRWRCPPQ ILYNPDWLVV AGEESVEAAL QNERIFGALE 120 AIYPRSSNIP PNPFVSPDVK DSYFDDSRTQ LVPLIPVEED DVSDQLEEPP AGPPNSYHQS 180 DKYDSAIVRV PQGSDAPFTT AQQHPNGSIN TASAAGISTD PDAVAAAIMQ SNQMGNMIDQ 240 DLLIKILSDP AQLERLMKEY GTLKHEQPTN SPVPAPMLRG PPPQMTASIP VPFPDHVTTF 300 HNINPTLPPP PPVMNRLPPA IPSVGMNPPA SSSQAVNFSN IPGRGINYYK TLIHQHGGER 360 QEPLQQHGMQ FAMHHHSVPS QTSTIDVVSN GSMPGREKQR PTKPCAYFNS ARGCRNGANC 420 TFLHDVSAAR KEQPKGSKRI KLDSRIAGRY *

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence Send to blast

MMGSRRPRRV SWATGANLCK VRLFLSEDSP SQAGLRPQDN LQAKGSWLMH AAGPSSDDSL  60
PPGFESLQPT NDHKIDISQI PLIRWRCPPQ ILYNPDWLVV AGEESVEAAL QNERIFGALE  120
AIYPRSSNIP PNPFVSPDVK DSYFDDSRTQ LVPLIPVEED DVSDQLEEPP AGPPNSYHQS  180
DKYDSAIVRV PQGSDAPFTT AQQHPNGSIN TASAAGISTD PDAVAAAIMQ SNQMGNMIDQ  240
DLLIKILSDP AQLERLMKEY GTLKHEQPTN SPVPAPMLRG PPPQMTASIP VPFPDHVTTF  300
HNINPTLPPP PPVMNRLPPA IPSVGMNPPA SSSQAVNFSN IPGRGINYYK TLIHQHGGER  360
QEPLQQHGMQ FAMHHHSVPS QTSTIDVVSN GSMPGREKQR PTKPCAYFNS ARGCRNGANC  420
TFLHDVSAAR KEQPKGSKRI KLDSRIAGRY *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.3G028200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004960188.1	0.0	zinc finger CCCH domain-containing protein 30
Swissprot	Q7XM16	1e-180	C3H30_ORYSJ; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A368QAM3	0.0	A0A368QAM3_SETIT; Uncharacterized protein
STRING	Si024685m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8680	10	13

Link Out ? help Back to Top
Phytozome	Sevir.3G028200.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]