PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G021500.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C3H
Protein Properties Length: 642aa    MW: 72013 Da    PI: 5.1432
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G021500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.4e-075477327
                        S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                        +++C +f++ G C  GdrC+F Hgp
  Sevir.3G021500.1.p 54 MVPCYYFQK-GNCLKGDRCPFYHGP 77
                        789******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.699126IPR000571Zinc finger, CCCH-type
SMARTSM003560.4225IPR000571Zinc finger, CCCH-type
PfamPF146081.5E-5524No hitNo description
SMARTSM003564.1E-65177IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.0515178IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.07E-55276IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-45377IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-45577IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    Send to blast
MNPRDCWYWL NGSCLNPKCS FRHPPIDGLF SGAPTPGVPP VSSHYGAYNS GKQMVPCYYF  60
QKGNCLKGDR CPFYHGPQGA GNNPTEQVAK VSSFPVELPQ AKKNEESAAP DNSTQQGARI  120
IDDRTMVHVA KSVIGAIPTE LSSNAVKSRP NSEQAPNNTL AAKKSFTTEE DHPMHYENLL  180
PVEGDSVQEW NQSFQMPPTD DLPQNSREAD DFLGESSPGF DVLVDNDAEG AAYLHDEEDF  240
GRDMYPVEDY EYAPADFDIR AQHESEKFNG MGENGQIGQL CDGYERKRRR SSSERSMDRP  300
FHSDRRFLHR GPDRDGIDGS DLRHQLRRRR ISGPSTAISP ERANGGRHWR DERYRESAHG  360
GHHMHSDRRQ GSRGSTLSSR LQARIKLPGR SPDRVDTRFE DERDRRLRER FSPAARLADF  420
HGSRHRESGQ HQERSHRRSS ELVSSARHAD GLSFKRDSVD SARFAARRNF GEPRKANGIV  480
ESEASLDFEG PKPLSVILQR KREAAGGNNL ASSYDKSAEA AVMQAGSLVE SEKKGCDNII  540
ISENCKSGSG DEEYKEEYHV PVEGHGQSSS HGDKFEVEDA AEVDPERNQE ADNYDQREGE  600
SDDYETMEGH DYKSEDENAY QDDEEFDDDD DFARKVGVVF S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1285289RKRRR
2285290RKRRRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G021500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014660437.10.0zinc finger CCCH domain-containing protein 32
SwissprotQ0J9520.0C3H32_ORYSJ; Zinc finger CCCH domain-containing protein 32
TrEMBLK3Z4H80.0K3Z4H8_SETIT; Uncharacterized protein
STRINGSi021446m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66043241
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]