PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.3G015900.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Dof

Protein Properties

Length: 208aa MW: 21771.2 Da PI: 7.8454

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.3G015900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	114.4	5e-36	45	100	3	58
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrkn 58 +++l+cprC+stntkfCyynnys++qPr+fC+aCrryWt+GG+lr+vPvGg++r+ Sevir.3G015900.1.p 45 QQQLECPRCQSTNTKFCYYNNYSTAQPRHFCRACRRYWTHGGTLRDVPVGGASRRT 100 7899*************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	9.5E-33	46	100	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-24	48	99	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.708	48	102	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	50	86	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0000976	Molecular Function	transcription regulatory region sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MAPAASILSA TSAAAASKRP PASDAEPLLQ GDGEAARKGQ QPSRQQQLEC PRCQSTNTKF 60 CYYNNYSTAQ PRHFCRACRR YWTHGGTLRD VPVGGASRRT GGSKRRRVSA EPSPSASASS 120 PPQTTAGADA FLLAPDLSAF PFLSDGSFLM PPQLDLGVAP AAFSSWQSVV PDFYDGLAPW 180 DDGATGMTGP WGDIAGGLEP SWPPPGN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	103	107	KRRRV

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00593	DAP	Transfer from AT5G66940	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.3G015900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK107524	3e-79	AK107524.1 Oryza sativa Japonica Group cDNA clone:002-129-F12, full insert sequence.
GenBank	AL606668	3e-79	AL606668.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064G10, complete sequence.
GenBank	AL732349	3e-79	AL732349.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0402C08, complete sequence.
GenBank	AL732353	3e-79	AL732353.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0801D08, complete sequence.
GenBank	AP014960	3e-79	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBank	AY461803	3e-79	AY461803.1 Oryza sativa (japonica cultivar-group) Dof28 mRNA, complete cds.
GenBank	CP012612	3e-79	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBank	GQ184611	3e-79	GQ184611.1 Oryza sativa Japonica Group Dof-like zinc finger protein mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004960063.1	1e-148	dof zinc finger protein 2
TrEMBL	K3Z9N5	1e-147	K3Z9N5_SETIT; Uncharacterized protein
STRING	Si023256m	1e-148	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14047	24	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66940.1	3e-33	Dof family protein

Link Out ? help Back to Top
Phytozome	Sevir.3G015900.1.p