PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G001100.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 468aa    MW: 51654.4 Da    PI: 4.7133
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G001100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM156.98.5e-49691971129
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         lppGfrFhPtd el v+yLk+k+ gk+l++ ++i+e+d+yk+ PwdLp+  ++++++  wyfF++rd+ky++g r+nr+t  gyWkatgkd
  Sevir.3G001100.1.p  69 LPPGFRFHPTDVELTVYYLKRKLLGKHLRC-NAITEIDLYKFAPWDLPEkaSLESNDLVWYFFCPRDRKYSSGLRTNRSTGVGYWKATGKD 158
                         79****************************.89***************52355556669******************************** PP

                 NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                         ++v+  ++++vg+k+tLvf+ g+ p+g +tdWvm eyrle
  Sevir.3G001100.1.p 159 RPVFY-NSRTVGMKRTLVFHLGKPPRGDRTDWVMYEYRLE 197
                         *****.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.22E-6062219IPR003441NAC domain
PROSITE profilePS5100555.15669219IPR003441NAC domain
PfamPF023658.3E-2670196IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MLQTLLAPHN ISTLDLIPPI FVVLDIPAFT TLLLQPELFL LYFQFCILLL SILLLKENCT  60
ILPMAKTSLP PGFRFHPTDV ELTVYYLKRK LLGKHLRCNA ITEIDLYKFA PWDLPEKASL  120
ESNDLVWYFF CPRDRKYSSG LRTNRSTGVG YWKATGKDRP VFYNSRTVGM KRTLVFHLGK  180
PPRGDRTDWV MYEYRLEDEE LAASGVKLDA CVLCKIFQKS GPGPKIGAQY GAPFNEEDWN  240
DASNVECSPF APSVAPRAPE SSHGGLNSAG QHLAVSYDGK VSMGLLSESN NERAVNRVHP  300
DRPSNIPIDC IHIELLTEII RCSSTNLLCT AAEDGLLPDS TAGYGNEDGV SLDDTETIFC  360
GVDEVASQPV VNNSNHCDSC EHLIHPMPEA RGTEQYLELN DLSFSLADGP DSCGMLSSHD  420
ISIEHPFDLE PRSEQDSLDC ISNTGNTSTS TTGGSFPSVP AVDERRT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-516522011169Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G001100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004959911.10.0NAC domain-containing protein 82
RefseqXP_012699860.10.0NAC domain-containing protein 82
TrEMBLA0A368Q9P80.0A0A368Q9P8_SETIT; Uncharacterized protein
STRINGSi022216m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP148561721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.48e-80NAC domain containing protein 82