PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.2G443200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 217aa MW: 23755.7 Da PI: 6.6752 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.6 | 7.5e-19 | 74 | 122 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp + +r++lg+f tae Aa+a+++a+++++g Sevir.2G443200.1.p 74 YRGIRRRP-WGKWAAEIRDPAK---GARVWLGTFATAEAAARAYDRAARRIRG 122 9*******.**********843...4*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.9E-22 | 73 | 131 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-31 | 73 | 131 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.632 | 73 | 130 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-37 | 73 | 136 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-12 | 74 | 122 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.90E-15 | 74 | 131 | No hit | No description |
PRINTS | PR00367 | 2.5E-11 | 74 | 85 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-11 | 96 | 112 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MCGGAIISEF IPQRDARGRA SGSKRGLCAE DLWPQAAAGF DDVPAAVDGY EFTGAASFPH 60 DQEPARKRER KTMYRGIRRR PWGKWAAEIR DPAKGARVWL GTFATAEAAA RAYDRAARRI 120 RGSKAKVNFP NEDPPPDDDD HLRQGMLPVS SCITDYDAAV MVGFFQQHHQ QQHPYVPDAV 180 PVMAAPPPED VAYVQPQDAG MGMWTFDGIN TATVPM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 9e-23 | 74 | 130 | 6 | 63 | ATERF1 |
3gcc_A | 9e-23 | 74 | 130 | 6 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 64 | 72 | ARKRERKTM |
2 | 66 | 80 | KRERKTMYRGIRRRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9159183}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.2G443200.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By 1-aminocyclopropane-1-carboxylic acid (ACC, ethylene precursor), methyl jasmonate (MeJA), and Botrytis cinerea. Also induced by cadmium. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9159183}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU976870 | 1e-106 | EU976870.1 Zea mays clone 992413 mRNA sequence. | |||
GenBank | KJ728348 | 1e-106 | KJ728348.1 Zea mays clone pUT6630 AP2-EREBP transcription factor (EREB200) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004958676.1 | 1e-154 | ethylene-responsive transcription factor ERF098 | ||||
Swissprot | P42736 | 7e-37 | RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3 | ||||
TrEMBL | K3ZWU7 | 1e-153 | K3ZWU7_SETIT; Uncharacterized protein | ||||
STRING | Si031079m | 1e-154 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11585 | 28 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 1e-28 | ethylene-responsive element binding protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.2G443200.1.p |