PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G435400.3.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family CO-like
Protein Properties Length: 389aa    MW: 40795.4 Da    PI: 6.3467
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G435400.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.49.4e-061453437
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......H 37
                        + C+ +   ++  +C+ ++  lC  C  + H g       H
  Sevir.2G435400.3.p 14 PACDFCAGLPAVVYCRADSARLCLPCDRYVH-GantvstrH 53
                        78***************************99.434555555 PP
2CCT63.46.9e-22344385344
                 CCT   3 aallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                           ++RYkeKrk+R+F+K+irYesRKa+A+ R R+KGrF+++ 
  Sevir.2G435400.3.p 344 TVISRYKEKRKNRRFDKQIRYESRKARADGRLRIKGRFARSG 385
                         5689***********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.5E-101158IPR000315B-box-type zinc finger
PROSITE profilePS501199.6131158IPR000315B-box-type zinc finger
CDDcd000212.32E-61458No hitNo description
PROSITE profilePS5101714.991342384IPR010402CCT domain
PfamPF062034.5E-16344384IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MSVAGAGGEE TPLPACDFCA GLPAVVYCRA DSARLCLPCD RYVHGANTVS TRHARAPLCA  60
ACRSAAAAFR RSAAGCGGGG LCADCDFEEG HRRDGDPPPL HDRRAVEVYA GCPSIAELAA  120
VLGVGGRKKL TTVAGDGNGV GWWPDWEELQ VLRLEDVIVP TTSCHGLQPL LEPSSAPKHR  180
SSGGKLTEEV IRQLGELAKS EAAAEAAEAE QFPSWASSEY GIGDGDFEAF HNKAASMSVP  240
SCEEAWMTTD DSNGACGMAH DAAHDQAPAA VSSPAEPSLS SFVAMSEICP SMAIGNSVGD  300
VVDNGSSSSS SKRDAAEATA PRQHAAPAPA KKAGYDVAYP DRGTVISRYK EKRKNRRFDK  360
QIRYESRKAR ADGRLRIKGR FARSGEAS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G435400.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958616.10.0zinc finger protein CONSTANS-LIKE 12 isoform X2
TrEMBLK3ZU590.0K3ZU59_SETIT; Uncharacterized protein
STRINGSi030140m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.13e-16B-box type zinc finger protein with CCT domain