PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.2G400300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 327aa MW: 36392.2 Da PI: 4.6155 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.4 | 2.3e-20 | 100 | 150 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+G+r+++ +g+W+AeIrdp++ r++lg++ taeeAa+a++ a+++++g Sevir.2G400300.1.p 100 TQYRGIRRRP-WGKWAAEIRDPCK---GVRVWLGTYNTAEEAARAYDVAARRIRG 150 58********.**********854...3*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.48E-32 | 100 | 160 | No hit | No description |
SuperFamily | SSF54171 | 8.5E-23 | 101 | 159 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.0E-13 | 101 | 150 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-36 | 101 | 164 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.803 | 101 | 158 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-32 | 101 | 159 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-11 | 102 | 113 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-11 | 124 | 140 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0034059 | Biological Process | response to anoxia | ||||
GO:0071456 | Biological Process | cellular response to hypoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MCGGAILSDL YSPVRRTVTA GDLWAESGSR RSGKNQKRSS WEFDEADDDN FEADFEDFED 60 CSSVEEVDFG HEEKDFQINS SIFMKFNGHT AKVACRKRKT QYRGIRRRPW GKWAAEIRDP 120 CKGVRVWLGT YNTAEEAARA YDVAARRIRG KKAKVNFPDT ITASAKRHPG RVPRPAKKVM 180 SQESLKFSSA SEHAISAGSS TDATVVKIEL SESDSPLPMS SAWLDAFELN QLDGSKYLEA 240 GGKETTEETD HENGVTADMV FGNGEVWLAD EFAYYEPYPN FMQLPYLEGN SYENIDALFN 300 GEVAQDGVNI GGLWSFDDVP MDSGVY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-20 | 101 | 163 | 5 | 68 | ATERF1 |
3gcc_A | 3e-20 | 101 | 163 | 5 | 68 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00230 | DAP | Transfer from AT1G72360 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.2G400300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012698773.1 | 0.0 | ethylene-responsive transcription factor ERF073 | ||||
TrEMBL | K3ZV83 | 0.0 | K3ZV83_SETIT; Uncharacterized protein | ||||
STRING | Si030514m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14560 | 21 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72360.3 | 5e-26 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.2G400300.1.p |