PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G399100.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family FAR1
Protein Properties Length: 706aa    MW: 80290.5 Da    PI: 7.5582
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G399100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA43.64e-144682135
                GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35
                        C  Cg +   Tp++Rrgpdg++tLCnaCG+ yrk ++
  Sevir.2G399100.1.p 46 CLRCGISGnaTPHMRRGPDGPRTLCNACGIAYRKGKM 82
                        5667777777************************876 PP
2FAR182.85.7e-26116203191
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                         +fYn+YA ++GFsvrks+s+ks++n  ++ rtfvCs+eg+++++k+   +++++r  tr+gC a+l +k + + k++vt+++ eHnH+lap
  Sevir.2G399100.1.p 116 EFYNKYAGHIGFSVRKSTSHKSSENI-TKVRTFVCSREGYNRDKKSL--EAKKPRLDTRIGCPARLIIKVTPECKYRVTDFKAEHNHQLAP 203
                         6*********************6666.899*************9988..99*************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.7E-63995IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.42E-104293No hitNo description
Gene3DG3DSA:3.30.50.103.8E-114584IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.87E-84583No hitNo description
PfamPF003201.2E-114681IPR000679Zinc finger, GATA-type
PfamPF031013.2E-23116203IPR004330FAR1 DNA binding domain
PfamPF105511.9E-26326420IPR018289MULE transposase domain
PROSITE profilePS509669.916594641IPR007527Zinc finger, SWIM-type
PfamPF044343.0E-6611640IPR007527Zinc finger, SWIM-type
SMARTSM005752.6E-6616643IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MMHMLVAPDG GGGELHPYGA PPAPVEQELE LLRDTADDGL EGHVRCLRCG ISGNATPHMR  60
RGPDGPRTLC NACGIAYRKG KMRRMIEAEP PIDEAALAKL VPEVGMEFES EEKAYEFYNK  120
YAGHIGFSVR KSTSHKSSEN ITKVRTFVCS REGYNRDKKS LEAKKPRLDT RIGCPARLII  180
KVTPECKYRV TDFKAEHNHQ LAPPSTMHML RSQRILTELQ SGEAELSDDS VVTPTTKATG  240
DLVVRQVSFL RNISLLPADY KNYLRSKRMK AMQPGDGGAI LKYLQTMQMD NPSFFYTTQI  300
DEDDRLTNFF WADPKSRDDF NYFGDVLCLD TTYKINGYGR PLALFLGVNH HKQTIIFGAA  360
MLYDESFESY KWLFESFKIA MHGKQPTVAL IDQSIPLSSA MAAAWPNTTQ RICAWHIYQN  420
SLKHLNHVFQ GSKTFAKDFS KCVFGYEDGD EFLFAWRSML EKYDLRHNEW LSKVFDEKEQ  480
WALAYDRHIF CADIISALQV ESFSSILKKF LSPQLELLSF FKHYERAVDE HRYAELQADF  540
QASQSYPRIP PAKMLKQAAH TYTPVVFEIF RKEFELFMDS VLFSCGEAGT TSEYKVASSE  600
KPKEHFVRFD SSDCSCVCTC RKFEFMGIPC CHMLKVLDYR NIKELPQKYL LKRWRRTAKS  660
TNEDNEGNAT NANGSSLNVP APAANHHGLQ SFSAMIQDAS VSSMH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G399100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0558180.0BT055818.1 Zea mays full-length cDNA clone ZM_BFb0212N15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958302.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A368Q7Y10.0A0A368Q7Y1_SETIT; Uncharacterized protein
STRINGPavir.Ba00417.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-121FAR1-related sequence 5