PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sevir.2G384900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 231aa MW: 23398.8 Da PI: 8.3339 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 92.9 | 3.6e-29 | 15 | 116 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C++C+vlr++C++ Cvl+p++ +++q +++ +v+k+FG++ ++++l+a+pe +r+++++sl+yeA r+ +Pv+Gavg++ +++++ Sevir.2G384900.1.p 15 SCNGCRVLRKGCSEACVLRPCLqwiegAEAQGHATVFVAKFFGRAGLMSFLTAVPEPQRPAVFQSLLYEAAGRTINPVSGAVGLLGAGSWH 105 6*********************9999888899*********************************************************** PP DUF260 87 leqlkaelall 97 l+q+++e++l+ Sevir.2G384900.1.p 106 LCQAAVETVLR 116 *****998765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.721 | 14 | 120 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.8E-25 | 15 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 231 aa Download sequence Send to blast |
MRGGPLDTAV VPAMSCNGCR VLRKGCSEAC VLRPCLQWIE GAEAQGHATV FVAKFFGRAG 60 LMSFLTAVPE PQRPAVFQSL LYEAAGRTIN PVSGAVGLLG AGSWHLCQAA VETVLRGGGI 120 RPLPELDGGV PAADGSFAFT ARRAAGCSTF SAAKRATGRV LNVGAPVAVA GGAPEPSCDL 180 GLCLSPGSPP APGERRPRRP GTPSMTSEES VTTTSGGGGG REPELLNLFV * |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sevir.2G384900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004958181.1 | 1e-162 | LOB domain-containing protein 37 | ||||
Swissprot | Q9FN11 | 2e-68 | LBD37_ARATH; LOB domain-containing protein 37 | ||||
TrEMBL | K3ZWM9 | 1e-160 | K3ZWM9_SETIT; Uncharacterized protein | ||||
STRING | Si031011m | 1e-161 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4084 | 36 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G67420.1 | 1e-66 | LOB domain-containing protein 37 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sevir.2G384900.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|