PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.2G380500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | GRAS | ||||||||
Protein Properties | Length: 548aa MW: 60362.4 Da PI: 6.4402 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 437.9 | 7.3e-134 | 177 | 546 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 l+elL++cA+av++++ +++ ++ +l++++s +g+p++Rl ay++e+L arla+s++++ykal+++e + ss+ l+++++++e++P++ Sevir.2G380500.1.p 177 LKELLIACARAVEQNNSFAIDLMIPELRKMVSVSGEPLERLGAYMVEGLVARLASSGNSIYKALKCKEPK---SSDLLSYMHFLYEACPYF 264 5799*****************************************************************9...9***************** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180 kf+++ aN aI eav+ge+r+HiiDf i qG+QW++LlqaLa+Rp+gpp +RiTg++++ s + le +g+rL+++A +vpf+fn+ Sevir.2G380500.1.p 265 KFGYMSANGAIAEAVKGEDRIHIIDFHIAQGAQWISLLQALAARPGGPPFVRITGIDDSVSAyaRGGGLELVGRRLSHIAGLYKVPFQFNA 355 **********************************************************888899999************************ PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 va + +++e +L + pgEa+aVn+ l+lh+++de+vs++++rd++L+lvkslsPkv+++veqe+++n+++F++rf+e+l+yy+a+f+s+ Sevir.2G380500.1.p 356 -VAISGNEMEEGHLGIVPGEAVAVNFTLELHHIPDETVSTANHRDRILRLVKSLSPKVLTLVEQESNTNTAPFAQRFAETLDYYTAIFESI 445 .6889999*********************************************************************************** PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362 + lpre++eri++E+++l+reivn+vaceg+er+erhe ++kW++rl++aGF+p pls +++++k+ll+ ++ d y++ e++g l+lgW Sevir.2G380500.1.p 446 DLALPREDRERINMEQHCLAREIVNLVACEGEERVERHEVFGKWKARLMMAGFRPSPLSALVNATIKTLLQSYSPD-YKLAERDGVLYLGW 535 **************************************************************************66.************** PP GRAS 363 kdrpLvsvSaW 373 k+rpL++ SaW Sevir.2G380500.1.p 536 KNRPLIVSSAW 546 *********** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 69.438 | 151 | 528 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.5E-131 | 177 | 546 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 548 aa Download sequence Send to blast |
MADTPTSRMV HPFGNVPRQT PKQFLYSGNT QHLCHPYQSA SDTHVVPQHH YTMKSHSPDA 60 VSEEHETRKQ YTLDSSAASG CSRHDSPSSQ SIHTGSGSPL SHEDSHSGST NGNGSPVSAS 120 CVTEDPTDLK QKLKDLEAVM LGTDSEIVDS LEISVANQLS LEPEKWVHMM SMPKGNLKEL 180 LIACARAVEQ NNSFAIDLMI PELRKMVSVS GEPLERLGAY MVEGLVARLA SSGNSIYKAL 240 KCKEPKSSDL LSYMHFLYEA CPYFKFGYMS ANGAIAEAVK GEDRIHIIDF HIAQGAQWIS 300 LLQALAARPG GPPFVRITGI DDSVSAYARG GGLELVGRRL SHIAGLYKVP FQFNAVAISG 360 NEMEEGHLGI VPGEAVAVNF TLELHHIPDE TVSTANHRDR ILRLVKSLSP KVLTLVEQES 420 NTNTAPFAQR FAETLDYYTA IFESIDLALP REDRERINME QHCLAREIVN LVACEGEERV 480 ERHEVFGKWK ARLMMAGFRP SPLSALVNAT IKTLLQSYSP DYKLAERDGV LYLGWKNRPL 540 IVSSAWH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 6e-66 | 181 | 547 | 8 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.2G380500.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT063928 | 0.0 | BT063928.1 Zea mays full-length cDNA clone ZM_BFc0120M18 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004958142.1 | 0.0 | chitin-inducible gibberellin-responsive protein 2 | ||||
Swissprot | Q8GVE1 | 0.0 | CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2 | ||||
TrEMBL | K3ZS38 | 0.0 | K3ZS38_SETIT; Uncharacterized protein | ||||
STRING | Si029418m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1513 | 37 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.2G380500.1.p |
Publications ? help Back to Top | |||
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