PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G375900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 318aa    MW: 33952.5 Da    PI: 7.0191
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G375900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.24.2e-184999155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        s++ GVr+++ +grWvAeI+d +   ++ r +lg+f tae Aaka+++a++ l+g
  Sevir.2G375900.1.p 49 SKFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEAAAKAYDEAARLLRG 99
                        79********.7*********32...35***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.5E-124999IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-1949108IPR016177DNA-binding domain
CDDcd000181.81E-1649107No hitNo description
SMARTSM003804.7E-3450113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.5E-2850107IPR001471AP2/ERF domain
PROSITE profilePS5103219.92850107IPR001471AP2/ERF domain
PRINTSPR003676.2E-75162IPR001471AP2/ERF domain
PRINTSPR003676.2E-77389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MELHFQPQSS GFQLEDYSSY YYYYYQQEAA AQAKPSKPRG RKKGSNNHSK FVGVRQRPSG  60
RWVAEIKDTT QKIRMWLGTF ETAEAAAKAY DEAARLLRGN EARTNFAPRI SPDCPLAVRI  120
RGLLHHKKVK KAKAAAASSS SAAAAAISKK KAAISPAPTT SNSNSNSNSN SNNNSNSTNS  180
ACGGSSSSSS SSSSAVSCDD AVLNGGGGAL DASEVYRPEF AAVGAEEFDS WMFDSAFGQF  240
PALDSFAAVD TAVPAAPVEE EPVATAAPGE MAEFERIKVE RRISASLYAM NGLQEYFDRV  300
LDASACDPLW DLSPLCH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-13481061271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G375900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0404151e-161BT040415.1 Zea mays full-length cDNA clone ZM_BFc0090C04 mRNA, complete cds.
GenBankJX4699531e-161JX469953.1 Zea mays subsp. mays clone UT3215 AP2-EREBP-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958111.11e-162ethylene-responsive transcription factor RAP2-11
TrEMBLK3ZVQ51e-165K3ZVQ5_SETIT; Uncharacterized protein
STRINGSi030686m1e-166(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39003273
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.16e-26related to AP2 11