PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G366900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 505aa    MW: 53378.2 Da    PI: 9.4594
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G366900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1721.8e-531192471128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhPtdeelvv+yLkkk+++ +l++  +i+evd+yk++Pw+Lp k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+
  Sevir.2G366900.1.p 119 LPPGFRFHPTDEELVVHYLKKKAASAPLPV-AIIAEVDLYKFDPWELPDKASFGEHEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKP 208
                         79****************************.88***************8888999************************************ PP

                 NAM  92 vlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +l++  ++e+vg+kk Lvfy+g+ pkg kt+W+mheyrl
  Sevir.2G366900.1.p 209 ILAStgNREKVGVKKALVFYRGKPPKGLKTNWIMHEYRL 247
                         **99888889***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-63116284IPR003441NAC domain
PROSITE profilePS5100561.943119284IPR003441NAC domain
PfamPF023656.0E-28120247IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009753Biological Processresponse to jasmonic acid
GO:0045995Biological Processregulation of embryonic development
GO:0048317Biological Processseed morphogenesis
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MPSAPPTPSF PARLRLRLWP ALLHRHGSIG LPTKPPKIPA QITRPPPPAQ LLPTDSVTNP  60
GYPRRCLLRS FTLEALPSCR DPSIHPAGDR PMRSMESTDS SSGSAPPPQQ KQTSSAPDLP  120
PGFRFHPTDE ELVVHYLKKK AASAPLPVAI IAEVDLYKFD PWELPDKASF GEHEWYFFSP  180
RDRKYPNGAR PNRAATSGYW KATGTDKPIL ASTGNREKVG VKKALVFYRG KPPKGLKTNW  240
IMHEYRLADA ASSAAANRPP PGAGGGKATS LRLDDWVLCR IYKKTTKLGA GDQQRSMECE  300
GSVEDAVMAA YPRHAAAAAM AAAAGGGGAH GGNYTSLLHH HEGHEDNFLD GLLTPEDAGG  360
LSAGATSLSH LAAAARAAPS ATKQLFVSSS TPFNWLDASA LAILPPTKRF HGYSGRDATD  420
GGMSLSSPSE RNQLGAVGAG AVDNDTGGGG ANAIPTFLTP LGVQAAATYH HHAILGTPVP  480
PEAAAAACSF QHPYQQLSGV NWNP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A7e-7111928620170NAC domain-containing protein 19
3swm_B7e-7111928620170NAC domain-containing protein 19
3swm_C7e-7111928620170NAC domain-containing protein 19
3swm_D7e-7111928620170NAC domain-containing protein 19
3swp_A7e-7111928620170NAC domain-containing protein 19
3swp_B7e-7111928620170NAC domain-containing protein 19
3swp_C7e-7111928620170NAC domain-containing protein 19
3swp_D7e-7111928620170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269|PubMed:17124321}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00361DAPTransfer from AT3G15510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G366900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022680293.10.0NAC transcription factor NAM-B2
SwissprotA0SPJ90.0NAM2_HORVV; NAC transcription factor NAM-2
TrEMBLA0A368Q6E80.0A0A368Q6E8_SETIT; Uncharacterized protein
STRINGSi032676m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75723649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.13e-86NAC domain containing protein 25
Publications ? help Back to Top
  1. Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J
    A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat.
    Science, 2006. 314(5803): p. 1298-301
    [PMID:17124321]