PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.2G364300.8.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

FAR1

Protein Properties

Length: 820aa MW: 93111.4 Da PI: 6.8015

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.2G364300.8.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.2	1e-26	36	123	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YA++vGF vr+s+ ++++n it+rtfvCs+eg+re++k + ++++ +r+etr+gC a+l+++++ +gk+++t+++ +HnH+la Sevir.2G364300.8.p 36 EFYNAYAEKVGFFVRRSTLWTTSKNI-ITRRTFVCSREGFREKKKGA-KEAKCPRPETRIGCPASLTIRLTANGKYRLTEFVPNHNHQLA 123 6******************97766.************9999.999***********************************97 PP
2	FAR1	83.5	3.4e-26	165	251	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY+ YA ++GF+vr+++++ + +++ it+r fvCskeg+re+++ + ++ +++r+etrtgC a++++++ ++gk++vt++++ HnH+l Sevir.2G364300.8.p 165 EFYSMYAGKIGFNVRRASMTVN-TENVITRRMFVCSKEGFREKKRGA-KRVKKPRPETRTGCPACMVIRLGTNGKYQVTEFVTFHNHQL 251 6**************99998.5666************9998.99***********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.4E-24	36	123	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	2.2E-22	165	251	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.6E-22	368	461	IPR018289	MULE transposase domain
Pfam	PF04434	3.1E-7	634	680	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.794	634	681	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.9E-7	656	683	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 820 aa Download sequence Send to blast
MADVAAADVN PAIDSCDENM LPKVNMLFDG ESDAYEFYNA YAEKVGFFVR RSTLWTTSKN 60 IITRRTFVCS REGFREKKKG AKEAKCPRPE TRIGCPASLT IRLTANGKYR LTEFVPNHNH 120 QLATASTIHM LKAKKIRRKA RAVRENLVDE TVSMPEFENE DEAYEFYSMY AGKIGFNVRR 180 ASMTVNTENV ITRRMFVCSK EGFREKKRGA KRVKKPRPET RTGCPACMVI RLGTNGKYQV 240 TEFVTFHNHQ LGAAAASDLA MASQSTENDQ EDGVDLADRS PDDSVHKQNL INESATLNSI 300 EGRSCKRYKC TKTPHYGDVG ATLEYLQKMQ HDNPSFFYAV KSDENGNFTN FFWADSKSTV 360 DFVHFGDVVC FDSGYALQGY GRPLALFTGL NHHKQTVIFG AALLYDESNE AFRWLLDTFK 420 MAMNGNPKTL LTDRSAAISE AVAATLPATA HRYCVWQIYQ NALQQLSQAF HGSKTLECNF 480 KRCLFDCEDE DEFLTAWKEM LEKYDLEDNQ WLADLYSIKE KWALPYGRDA FYADMKSVQQ 540 KESLTSELKK HLCLEYDLLN FFEQFERLLC DRRSAELEAD VNANQSTKKP PMRMLRQAAN 600 VYTPAAFKMF EREFELYMDC MLYNCGEMGT IFEYRISVED NPKDHFVKFD SHNSMMNCTC 660 KTFEFIGIPC RHMLKVLDTR NIKDLPVQYI VKRWTKDAKS GSSNGGCAFS FEPESAQTKR 720 YNLLCRIFSI AAARAATSAE SFTFMENQSN ILMDQVEQVI QTRPPDIVDL IGANCDRTQS 780 SVDNIVAEGI HGHTNFLNGS ADGSLTFPFT LGAGALDYR*

Sequence ? help Back to Top

Protein Sequence Length: 820 aa Download sequence Send to blast

MADVAAADVN PAIDSCDENM LPKVNMLFDG ESDAYEFYNA YAEKVGFFVR RSTLWTTSKN  60
IITRRTFVCS REGFREKKKG AKEAKCPRPE TRIGCPASLT IRLTANGKYR LTEFVPNHNH  120
QLATASTIHM LKAKKIRRKA RAVRENLVDE TVSMPEFENE DEAYEFYSMY AGKIGFNVRR  180
ASMTVNTENV ITRRMFVCSK EGFREKKRGA KRVKKPRPET RTGCPACMVI RLGTNGKYQV  240
TEFVTFHNHQ LGAAAASDLA MASQSTENDQ EDGVDLADRS PDDSVHKQNL INESATLNSI  300
EGRSCKRYKC TKTPHYGDVG ATLEYLQKMQ HDNPSFFYAV KSDENGNFTN FFWADSKSTV  360
DFVHFGDVVC FDSGYALQGY GRPLALFTGL NHHKQTVIFG AALLYDESNE AFRWLLDTFK  420
MAMNGNPKTL LTDRSAAISE AVAATLPATA HRYCVWQIYQ NALQQLSQAF HGSKTLECNF  480
KRCLFDCEDE DEFLTAWKEM LEKYDLEDNQ WLADLYSIKE KWALPYGRDA FYADMKSVQQ  540
KESLTSELKK HLCLEYDLLN FFEQFERLLC DRRSAELEAD VNANQSTKKP PMRMLRQAAN  600
VYTPAAFKMF EREFELYMDC MLYNCGEMGT IFEYRISVED NPKDHFVKFD SHNSMMNCTC  660
KTFEFIGIPC RHMLKVLDTR NIKDLPVQYI VKRWTKDAKS GSSNGGCAFS FEPESAQTKR  720
YNLLCRIFSI AAARAATSAE SFTFMENQSN ILMDQVEQVI QTRPPDIVDL IGANCDRTQS  780
SVDNIVAEGI HGHTNFLNGS ADGSLTFPFT LGAGALDYR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.2G364300.8.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT062235	0.0	BT062235.1 Zea mays full-length cDNA clone ZM_BFb0229O21 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004958034.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X2
TrEMBL	A0A368Q679	0.0	A0A368Q679_SETIT; Uncharacterized protein
STRING	Pavir.Bb03075.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-108	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Sevir.2G364300.8.p