PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.2G364300.6.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | FAR1 | ||||||||
Protein Properties | Length: 870aa MW: 97687.7 Da PI: 7.0946 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 85.1 | 1.1e-26 | 116 | 203 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YA++vGF vr+s+ ++++n it+rtfvCs+eg+re++k + ++++ +r+etr+gC a+l+++++ +gk+++t+++ +HnH+la Sevir.2G364300.6.p 116 EFYNAYAEKVGFFVRRSTLWTTSKNI-ITRRTFVCSREGFREKKKGA-KEAKCPRPETRIGCPASLTIRLTANGKYRLTEFVPNHNHQLA 203 6********************97766.****************9999.999*************************************97 PP | |||||||
2 | FAR1 | 83.4 | 3.7e-26 | 245 | 331 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY+ YA ++GF+vr+++++ + +++ it+r fvCskeg+re+++ + ++ +++r+etrtgC a++++++ ++gk++vt++++ HnH+l Sevir.2G364300.6.p 245 EFYSMYAGKIGFNVRRASMTVN-TENVITRRMFVCSKEGFREKKRGA-KRVKKPRPETRTGCPACMVIRLGTNGKYQVTEFVTFHNHQL 331 6****************99998.5666****************9998.99*************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.7E-24 | 116 | 203 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 2.4E-22 | 245 | 331 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.8E-22 | 448 | 541 | IPR018289 | MULE transposase domain |
Pfam | PF04434 | 3.3E-7 | 684 | 730 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 10.794 | 684 | 731 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 6.9E-7 | 706 | 733 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 870 aa Download sequence Send to blast |
MPSALGEKDP QVAPGPATAP PQVQALRPAD ATGSPVIDPR LAQQSWPGHV VLLRPCVPWP 60 PQVPVPLLLS AANPQQNANA MADVAAADVN PAIDSCDENM LPKVNMLFDG ESDAYEFYNA 120 YAEKVGFFVR RSTLWTTSKN IITRRTFVCS REGFREKKKG AKEAKCPRPE TRIGCPASLT 180 IRLTANGKYR LTEFVPNHNH QLATASTIHM LKAKKIRRKA RAVRENLVDE TVSMPEFENE 240 DEAYEFYSMY AGKIGFNVRR ASMTVNTENV ITRRMFVCSK EGFREKKRGA KRVKKPRPET 300 RTGCPACMVI RLGTNGKYQV TEFVTFHNHQ LGAAAASDLA MASQSTENDQ EDGVDLADRS 360 PDDSVHKQNL INESATLNSI EGRSCKRYKC TKTPHYGDVG ATLEYLQKMQ HDNPSFFYAV 420 KSDENGNFTN FFWADSKSTV DFVHFGDVVC FDSGYALQGY GRPLALFTGL NHHKQTVIFG 480 AALLYDESNE AFRWLLDTFK MAMNGNPKTL LTDRSAAISE AVAATLPATA HRYCVWQIYQ 540 NALQQLSQAF HGSKTLECNF KRCLFDCEDE DEFLTAWKEM LEKYDLEDNQ WLADLYSIKE 600 KWALPYGRDA FYADMKSVQQ KESLTKLEAD VNANQSTKKP PMRMLRQAAN VYTPAAFKMF 660 EREFELYMDC MLYNCGEMGT IFEYRISVED NPKDHFVKFD SHNSMMNCTC KTFEFIGIPC 720 RHMLKVLDTR NIKDLPVQYI VKRWTKDAKS GSSNGGCAFS FEPESAQTKR YNLLCRIFSI 780 AAARAATSAE SFTFMENQSN ILMDQVEQVI QTRPPDIVDL IGANCDRTQS SVDNIVAEGI 840 HGHTNFLNGS ADGSLTFPFT LGAGALDYR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.2G364300.6.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT062235 | 0.0 | BT062235.1 Zea mays full-length cDNA clone ZM_BFb0229O21 mRNA, complete cds. | |||
GenBank | KJ727731 | 0.0 | KJ727731.1 Zea mays clone pUT5671 FAR1 transcription factor (FAR1.10) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004958034.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 isoform X2 | ||||
TrEMBL | A0A368Q679 | 0.0 | A0A368Q679_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Bb03075.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-99 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.2G364300.6.p |