PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.2G357300.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

NAC

Protein Properties

Length: 402aa MW: 43070.8 Da PI: 4.7498

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.2G357300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	33.4	1.4e-10	25	125	32	127
NAM 32 evikevdiykvePwdLpkkvka..eekewyfFskrdkkyatgk....rknr.atksgyWkatgkdkevlskkgelvglkktLvfykgrapk 115 +++++vd++++ P+dL + ++ ++ wyf++ ++ k+++g+ r++ a+++ W++ k+v+ ++ g+ L + +++ ++ Sevir.2G357300.1.p 25 HFVHHVDVCSAAPEDLVADLEPapGTGVWYFYCVKKYKSTHGRpgghRQRAiAASDTCWHSEAGAKDVKG--SQGGGTVCNLSYGRKDGRS 113 5699**********853333226669****9999644444266556677999******87..66689999**999 PP NAM 116 gektdWvmheyr 127 ++ W+m ey Sevir.2G357300.1.p 114 FTRLGWCMMEYD 125 ***********5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	15.617	1	141	IPR003441	NAC domain
SuperFamily	SSF101941	3.01E-15	20	141	IPR003441	NAC domain
Pfam	PF02365	1.7E-4	43	124	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence Send to blast
MAAEDTGDDA SIALLHRLRS GATVHFVHHV DVCSAAPEDL VADLEPAPGT GVWYFYCVKK 60 YKSTHGRPGG HRQRAIAASD TCWHSEAGAK DVKGSQGGGT VCNLSYGRKD GRSFTRLGWC 120 MMEYDDATGG GDHVLCKIYR SPRAQGKPSS AASKTSSGSK RKAGGEHTEA RPAKLLHEQD 180 TFFTNDYAMP STVAQVNVGG GEEQHLSTQD GEFVETSYGL LPSDVAQVNV EEWIRGMEMF 240 GGEEEQQISK PEQDDGFVKV PPLMTEDITV EDYLLAPETT SGEASGMPAT FTPPDADLLD 300 VLERDSEFRV LQEQQTLQMQ QAHAAEPDPM AEFAVLCVSL VEGECFSEPR HTERGGAHGS 360 PAVAVVVRNT DALLHDGTCA VAAARMATQN GLNAALRRAT A*

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence Send to blast

MAAEDTGDDA SIALLHRLRS GATVHFVHHV DVCSAAPEDL VADLEPAPGT GVWYFYCVKK  60
YKSTHGRPGG HRQRAIAASD TCWHSEAGAK DVKGSQGGGT VCNLSYGRKD GRSFTRLGWC  120
MMEYDDATGG GDHVLCKIYR SPRAQGKPSS AASKTSSGSK RKAGGEHTEA RPAKLLHEQD  180
TFFTNDYAMP STVAQVNVGG GEEQHLSTQD GEFVETSYGL LPSDVAQVNV EEWIRGMEMF  240
GGEEEQQISK PEQDDGFVKV PPLMTEDITV EDYLLAPETT SGEASGMPAT FTPPDADLLD  300
VLERDSEFRV LQEQQTLQMQ QAHAAEPDPM AEFAVLCVSL VEGECFSEPR HTERGGAHGS  360
PAVAVVVRNT DALLHDGTCA VAAARMATQN GLNAALRRAT A*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.2G357300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002463549.1	5e-50	uncharacterized protein LOC8079646
TrEMBL	A0A368Q6E2	0.0	A0A368Q6E2_SETIT; Uncharacterized protein
STRING	Si039285m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4574	6	32

Link Out ? help Back to Top
Phytozome	Sevir.2G357300.1.p