PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G341100.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family FAR1
Protein Properties Length: 781aa    MW: 89118.8 Da    PI: 6.9143
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G341100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.15.2e-2254140290
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          Y++Y++++GFsvrk k+++   +++i +++++Cskeg + +e  +  +++ +r+ trt+Cka+++ + +++g+w v++++  HnH+la
  Sevir.2G341100.1.p  54 LYCDYGHRIGFSVRKGKQSYFIGTKNIRTKDYYCSKEGLKYDEPVT--EANFNRPDTRTNCKAMIRFRVDEKGRWTVIRFVPVHNHQLA 140
                         7********************9*******************99988..9999***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.2E-2054140IPR004330FAR1 DNA binding domain
PfamPF105511.6E-33262355IPR018289MULE transposase domain
PROSITE profilePS509669.211540576IPR007527Zinc finger, SWIM-type
PfamPF044344.1E-6544573IPR007527Zinc finger, SWIM-type
SMARTSM005753.4E-6551578IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 781 aa     Download sequence    Send to blast
MDSSQDSQEE RHQRRENGEE TEKAADYGSA LSRKEATEEL LGCIVHSEEE AYRLYCDYGH  60
RIGFSVRKGK QSYFIGTKNI RTKDYYCSKE GLKYDEPVTE ANFNRPDTRT NCKAMIRFRV  120
DEKGRWTVIR FVPVHNHQLA KPGERHMLRS AKSLAFGKSG VIDPSASTES HPINGFSDTI  180
EGDTVDNSGY TIRECYNQVG MQGITVIEAG DGQSLVSYFK RRTNEEGMFY WDVQVDQEGR  240
MTNFFYRDGK CRNDYGCFGD AIIFDTTYRT NKYNLICAPF VGVDHHWQNV VFGCAFLLDE  300
SVASYVWLFK SFLESMGGKS PKSIFTDQDE AIMQAVEQVF PNTQHCFSYW HILKNAQSHL  360
GSLNTSQAFQ HLFMQGSDSE EDFEESWTAM LREYKLQDNS WLNDLHRFRH KWCSALNKDT  420
FDGGINSSQW GEVSNNILSG ISDENTSLTR FALLLEKVVK DLRRNESEED FRCSQTAPVR  480
AVKHSTVLKQ AAESYTHRIY KLFEAEFLDG CGATSCHETS SGGNLLRFEI TMQGRGSKVW  540
AVALDTSTME ITCGCRKFER MGLLCSHALK VFTLQNVDTI PEKYVLKRWT KDARRSMFKL  600
AQDDSTQQEC TEAELAYRNR AMQYAYNLIM KSQELEESRK IFWDSLETGE KALEVFFEMR  660
NMRTQAAKDA SNREKKKKKP SKGPNSKKAK QAPAASSAGL ELIVQTNEHQ YQPSQDAQGN  720
ATIGRPYYYQ QAFPTAPIQP NQMYMHPNVH TMPLCTSQQD HLPAYAAIRP NSNFGGAKNI  780
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Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G341100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012699533.10.0protein FAR1-RELATED SEQUENCE 9 isoform X1
RefseqXP_014660260.10.0protein FAR1-RELATED SEQUENCE 9 isoform X1
TrEMBLA0A368Q6A70.0A0A368Q6A7_SETIT; Uncharacterized protein
STRINGSi029002m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-99FAR1-related sequence 5