PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.2G338300.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Dof

Protein Properties

Length: 344aa MW: 33781.6 Da PI: 8.0567

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.2G338300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.9	5.3e-39	33	92	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +al+cprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+s+ Sevir.2G338300.1.p 33 AEALRCPRCDSANTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRSR 92 57899****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.6E-33	35	90	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.385	36	90	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-27	36	90	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	38	74	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MAGAGGATAV QQPAAGARSG AGAAGAPVAD PRAEALRCPR CDSANTKFCY YNNYSLSQPR 60 HFCKACKRYW TRGGTLRNVP VGGGCRKNKR SRSSSGAAGA AGRSGSSAAA AAAAAATSSS 120 AASALSLPPP AGSLPSLTSA LGLSGGTSLA SLLLGTGAGG DHLGLFHAAM QSVVSSEATA 180 YEMQQQQQTQ VDHLLGLGYG GAAAQIQLKP WMQDAGAGGA GGIMDSFYAP LLSSSLVPGL 240 EELHVKAEAA GAGDHQQKAA PGDQQSGSWE LPTPSSSNVD ASIIASDALM AAAASMNPAV 300 SSTSTAATTA PSSFMYWGNG GIGGAAAAWP DLANCGSSIA TLF*

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MAGAGGATAV QQPAAGARSG AGAAGAPVAD PRAEALRCPR CDSANTKFCY YNNYSLSQPR  60
HFCKACKRYW TRGGTLRNVP VGGGCRKNKR SRSSSGAAGA AGRSGSSAAA AAAAAATSSS  120
AASALSLPPP AGSLPSLTSA LGLSGGTSLA SLLLGTGAGG DHLGLFHAAM QSVVSSEATA  180
YEMQQQQQTQ VDHLLGLGYG GAAAQIQLKP WMQDAGAGGA GGIMDSFYAP LLSSSLVPGL  240
EELHVKAEAA GAGDHQQKAA PGDQQSGSWE LPTPSSSNVD ASIIASDALM AAAASMNPAV  300
SSTSTAATTA PSSFMYWGNG GIGGAAAAWP DLANCGSSIA TLF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.2G338300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC582403	0.0	KC582403.1 Sorghum bicolor dof6 protein (dof6) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004957815.1	0.0	dof zinc finger protein 2-like
TrEMBL	A0A368Q7E4	0.0	A0A368Q7E4_SETIT; Uncharacterized protein
STRING	GRMZM2G134545_P01	1e-145	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8895	30	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	3e-33	TARGET OF MONOPTEROS 6

Link Out ? help Back to Top
Phytozome	Sevir.2G338300.1.p