PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G333200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family FAR1
Protein Properties Length: 852aa    MW: 94022.2 Da    PI: 7.6819
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G333200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.63.2e-2171173190
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkek.dgkwe 77 
                         +fY++YA ++GF vrks+++k++r++ +t+r fvCsk+g+r+e kk              +     + +e+rtgC a+l++k+    + ++
  Sevir.2G333200.1.p  71 EFYKAYAARLGFVVRKSNKSKNSRHT-VTRRLFVCSKQGFRQEPKKPqdeaagagaasssSPAPAPRCPESRTGCLASLTIKLIPsANAFR 160
                         6*****************99997666.****************999989999998776533333347799**************9999*** PP

                FAR1  78 vtkleleHnHela 90 
                         vt+++  HnH+la
  Sevir.2G333200.1.p 161 VTDFVAGHNHQLA 173
                         ***********97 PP

2FAR1705.5e-22221320290
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwevt 79 
                         fYn+YA++vGFsvr+s++k++   g i++r fvCs+eg +++ k++             +++ r   a trtgC+a++++k +   +++v+
  Sevir.2G333200.1.p 221 FYNRYAEHVGFSVRRSYKKRK--RGMIVSRIFVCSREGVSDRAKQEggaivpangvagsASTPRPGPAPTRTGCQARMVIKITPCRTYRVA 309
                         9*************9976665..899****************9999**********9876666777889********************** PP

                FAR1  80 kleleHnHela 90 
                         k+  eHnH+la
  Sevir.2G333200.1.p 310 KFFPEHNHPLA 320
                         *********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.2E-1871173IPR004330FAR1 DNA binding domain
PfamPF031015.7E-19221320IPR004330FAR1 DNA binding domain
PfamPF105511.9E-21409503IPR018289MULE transposase domain
PROSITE profilePS5096610.126677724IPR007527Zinc finger, SWIM-type
PfamPF044342.3E-5694723IPR007527Zinc finger, SWIM-type
SMARTSM005751.8E-5699726IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 852 aa     Download sequence    Send to blast
MSAAEDPSRL SGESSPSSPT SSGSSSPSSS GAATNLALTA STSAAGNDAD ADVPTSPYLG  60
MYFETEDDAY EFYKAYAARL GFVVRKSNKS KNSRHTVTRR LFVCSKQGFR QEPKKPQDEA  120
AGAGAASSSS PAPAPRCPES RTGCLASLTI KLIPSANAFR VTDFVAGHNH QLASAAPAVS  180
LALLPPNSSH HSIAAAARLP DPRDGPHVDM HFETEEDAYV FYNRYAEHVG FSVRRSYKKR  240
KRGMIVSRIF VCSREGVSDR AKQEGGAIVP ANGVAGSAST PRPGPAPTRT GCQARMVIKI  300
TPCRTYRVAK FFPEHNHPLA NPECVHKLRS HKMRARAHEF GAGDLHRRKQ GKGVQLGDAG  360
AALQYLEELQ VGNPSVYYAV GVGPDGKSAV NFFWADAKSI IDFRSFGDVV CFDTTYGLNI  420
YGRPFALFVG VDNHKQLLVF GAALLYDESI QSLKWTFEVF ADAMRARQPQ TIFIDERPEC  480
AVAAAEVWPG SNRCISVWHI YHNSKRHLKQ VFESSKSFSN SLSHCLFDYE DEMEFLSTWE  540
KLIEKYDISE SEWLSRLFME KEKWALPYQR TIFSADMLTT LQKDNMINEL KRELSEQEDI  600
LQFFRRYEAI LEEHRSKKLH ADVDGNQVTL PIPSLRMLKQ SSNAYTPEAF KMFQGEFEAY  660
MNCMSFPCGV VGTISEYKIV LDEKPSESIV KFDALDGSAS CSCKKFEAVG IQCCHVLKVL  720
DLKNIKELPE QYILKRWRKD ARSVQIGEEP TYGSGSVMRS PSEARFNNMC RLASLIASRA  780
AKSEEAMSYI ESQSSVLLKH LDDILQTGYP DMGNHAVASS SQAISFVGSQ HPDHTTQAGA  840
VAQTTNGLMG L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G333200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957765.10.0protein FAR1-RELATED SEQUENCE 7
TrEMBLA0A368Q5G50.0A0A368Q5G5_SETIT; Uncharacterized protein
STRINGSi033400m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-83FAR1-related sequence 5