PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sevir.2G333200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 852aa MW: 94022.2 Da PI: 7.6819 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 67.6 | 3.2e-21 | 71 | 173 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkek.dgkwe 77 +fY++YA ++GF vrks+++k++r++ +t+r fvCsk+g+r+e kk + + +e+rtgC a+l++k+ + ++ Sevir.2G333200.1.p 71 EFYKAYAARLGFVVRKSNKSKNSRHT-VTRRLFVCSKQGFRQEPKKPqdeaagagaasssSPAPAPRCPESRTGCLASLTIKLIPsANAFR 160 6*****************99997666.****************999989999998776533333347799**************9999*** PP FAR1 78 vtkleleHnHela 90 vt+++ HnH+la Sevir.2G333200.1.p 161 VTDFVAGHNHQLA 173 ***********97 PP | |||||||
2 | FAR1 | 70 | 5.5e-22 | 221 | 320 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwevt 79 fYn+YA++vGFsvr+s++k++ g i++r fvCs+eg +++ k++ +++ r a trtgC+a++++k + +++v+ Sevir.2G333200.1.p 221 FYNRYAEHVGFSVRRSYKKRK--RGMIVSRIFVCSREGVSDRAKQEggaivpangvagsASTPRPGPAPTRTGCQARMVIKITPCRTYRVA 309 9*************9976665..899****************9999**********9876666777889********************** PP FAR1 80 kleleHnHela 90 k+ eHnH+la Sevir.2G333200.1.p 310 KFFPEHNHPLA 320 *********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.2E-18 | 71 | 173 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 5.7E-19 | 221 | 320 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.9E-21 | 409 | 503 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.126 | 677 | 724 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 2.3E-5 | 694 | 723 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.8E-5 | 699 | 726 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 852 aa Download sequence Send to blast |
MSAAEDPSRL SGESSPSSPT SSGSSSPSSS GAATNLALTA STSAAGNDAD ADVPTSPYLG 60 MYFETEDDAY EFYKAYAARL GFVVRKSNKS KNSRHTVTRR LFVCSKQGFR QEPKKPQDEA 120 AGAGAASSSS PAPAPRCPES RTGCLASLTI KLIPSANAFR VTDFVAGHNH QLASAAPAVS 180 LALLPPNSSH HSIAAAARLP DPRDGPHVDM HFETEEDAYV FYNRYAEHVG FSVRRSYKKR 240 KRGMIVSRIF VCSREGVSDR AKQEGGAIVP ANGVAGSAST PRPGPAPTRT GCQARMVIKI 300 TPCRTYRVAK FFPEHNHPLA NPECVHKLRS HKMRARAHEF GAGDLHRRKQ GKGVQLGDAG 360 AALQYLEELQ VGNPSVYYAV GVGPDGKSAV NFFWADAKSI IDFRSFGDVV CFDTTYGLNI 420 YGRPFALFVG VDNHKQLLVF GAALLYDESI QSLKWTFEVF ADAMRARQPQ TIFIDERPEC 480 AVAAAEVWPG SNRCISVWHI YHNSKRHLKQ VFESSKSFSN SLSHCLFDYE DEMEFLSTWE 540 KLIEKYDISE SEWLSRLFME KEKWALPYQR TIFSADMLTT LQKDNMINEL KRELSEQEDI 600 LQFFRRYEAI LEEHRSKKLH ADVDGNQVTL PIPSLRMLKQ SSNAYTPEAF KMFQGEFEAY 660 MNCMSFPCGV VGTISEYKIV LDEKPSESIV KFDALDGSAS CSCKKFEAVG IQCCHVLKVL 720 DLKNIKELPE QYILKRWRKD ARSVQIGEEP TYGSGSVMRS PSEARFNNMC RLASLIASRA 780 AKSEEAMSYI ESQSSVLLKH LDDILQTGYP DMGNHAVASS SQAISFVGSQ HPDHTTQAGA 840 VAQTTNGLMG L* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sevir.2G333200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004957765.1 | 0.0 | protein FAR1-RELATED SEQUENCE 7 | ||||
TrEMBL | A0A368Q5G5 | 0.0 | A0A368Q5G5_SETIT; Uncharacterized protein | ||||
STRING | Si033400m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-83 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sevir.2G333200.1.p |