PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G314300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 512aa    MW: 52783.6 Da    PI: 9.1808
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G314300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-057193123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C+ C+k F r  nL+ H r H
  Sevir.2G314300.1.p 71 FVCEVCNKGFQREQNLQLHRRGH 93
                        89*******************88 PP
2zf-C2H213.30.00025147169123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC +C+k++  +s+ k H +t+
  Sevir.2G314300.1.p 147 WKCDKCNKRYAVQSDWKAHSKTC 169
                         58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.9E-67093IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.06E-77093No hitNo description
PROSITE profilePS5015711.0947193IPR007087Zinc finger, C2H2
PfamPF121713.2E-57193IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.00417193IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
SMARTSM00355300112142IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.7E-5135168IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.06E-7142167No hitNo description
SMARTSM00355110147167IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MAAASSAPFF GLGDTQMQPA QGSSLPQQNS AAAAPGAAAP PKKKRNQPGN PNPDAEVIAL  60
SPRTLLATNR FVCEVCNKGF QREQNLQLHR RGHNLPWKLK QKNPKEARRR VYLCPEPTCV  120
HHDPSRALGD LTGIKKHYCR KHGEKKWKCD KCNKRYAVQS DWKAHSKTCG TREYRCDCGT  180
LFSRRDSFIT HRAFCDALAR ESAQIPPIGA GLYVGSGSMS LGLSGAAAQM HGFADQGQSS  240
SAAAAAQFDH IMPSSSGPSM FRSQASASSS SLFLGGGAPS PAQEFSEDGE HSQGGQGSSL  300
LHGKSPFHGL MQLPEQQHQP GSSNANGNLL NLGFFSGNGG GSAGGQDASI AIQDQFNAAA  360
GGSNAEHGGV MASMGSHLSA GFPSSLYNSS PSAGLPQNSA TALLMKAAQM GSTSSTHNGP  420
SALLRAAGFS ASSGGQGTSR AAGEGTSHEA HFHDLIMNSL TGGGGGFSGA GAGFGAVDDG  480
RLSTRDFLGV GRGSMAPPGL HIGALDPAQM K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-33143205365Zinc finger protein JACKDAW
5b3h_F9e-33143205365Zinc finger protein JACKDAW
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00256DAPTransfer from AT2G02080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G314300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7548650.0AY754865.1 Zea mays INDETERMINATE-related protein 7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957598.10.0protein indeterminate-domain 5, chloroplastic
RefseqXP_004957599.10.0protein indeterminate-domain 5, chloroplastic
RefseqXP_004957600.10.0protein indeterminate-domain 5, chloroplastic
TrEMBLK3ZSG00.0K3ZSG0_SETIT; Uncharacterized protein
STRINGSi029540m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.11e-109indeterminate(ID)-domain 4