PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.2G309500.4.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Nin-like

Protein Properties

Length: 854aa MW: 93413.7 Da PI: 6.7125

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.2G309500.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.4	7e-29	536	587	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yF++++kdAA++Lgvc+T+LKriCRq+GI RWP+Rkik++ Sevir.2G309500.4.p 536 AEKTVSLQVLRQYFAGSLKDAARSLGVCPTTLKRICRQHGITRWPSRKIKKV 587 5899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.746	524	607	IPR003035	RWP-RK domain
Pfam	PF02042	2.4E-25	539	587	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.23E-22	745	842	No hit	No description
Gene3D	G3DSA:3.10.20.240	3.9E-25	751	836	No hit	No description
SMART	SM00666	4.4E-19	755	838	IPR000270	PB1 domain
PROSITE profile	PS51745	21.372	755	838	IPR000270	PB1 domain
CDD	cd06407	9.43E-42	756	836	No hit	No description
Pfam	PF00564	1.1E-15	756	836	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 854 aa Download sequence Send to blast
MEEGGGDPQP SFSLQARTPS EGGAAVDLDL LEQLLSGDNG WFDVVSRSPN SLASPPPAAF 60 FSADVTAAAV TTTSSSTQAA SSWWIQTGGA SPSSVRDRFS QALSYIRETQ SDGDVLVQLW 120 VPVSRGDGRL VLTTSGQPFT LDQSSDSLIR FREVSTKYQF SADVKSGDSP GLPGRVFIGR 180 LPEWSPDVRY FTTYEYPRVR DAQYLDVHGT MGLPVFEKGS YNCLGVIELI MTRQKLNFTS 240 ELNTICSALQ AVNLRSAEVS SVPRVQFSTA SYKNALPEIL EVLRAACLTH KLPLAQTWVT 300 CAQQGKRGSR HSDENYPYCI STIDEACFVN EPEMQDFHDA CSEHHLLRGQ GVAGKAFTTN 360 QPCFLPDIGS SAKLDYPLSH HAKIFKLKGA VAIRLRCTRT GTADFVLEFF LPTDCQALEE 420 QKEVLDSLSG TMRSVCQTLR VVTDKEMEDE AMWETNELNS FTPQGKNKAE ELSFGGNSAD 480 RRGEASWTSL AETSQQESEL AALRMHGMFS SGGQGPSLSG VQSAAEGSKA KRRTKAEKTV 540 SLQVLRQYFA GSLKDAARSL GVCPTTLKRI CRQHGITRWP SRKIKKVDHS LRKLQQIIDS 600 VHGAETSFQL NTLYKDLTNT SISSENNLSG SMTIPPTNQS NLTDFDKHQH HKSNSIVPST 660 SPSHSSCSHN SDSSPSCSGG ARKHAPQGII DLMKSGNPVK DSPIQTLQTE NTSLYEHFSV 720 HEAPTDLLQD VTEKANGGLH SSRSPSSPKQ NAEANMRVKA TFGSEKVRFR LNPKCDFQEL 780 KHEIAKRLSI VDTSSLILKY LDDDSEWVLM TCDADLQECF HVYKLADIQT IKISVHLAVS 840 PATRVTTGPT GLS*

Sequence ? help Back to Top

Protein Sequence Length: 854 aa Download sequence Send to blast

MEEGGGDPQP SFSLQARTPS EGGAAVDLDL LEQLLSGDNG WFDVVSRSPN SLASPPPAAF  60
FSADVTAAAV TTTSSSTQAA SSWWIQTGGA SPSSVRDRFS QALSYIRETQ SDGDVLVQLW  120
VPVSRGDGRL VLTTSGQPFT LDQSSDSLIR FREVSTKYQF SADVKSGDSP GLPGRVFIGR  180
LPEWSPDVRY FTTYEYPRVR DAQYLDVHGT MGLPVFEKGS YNCLGVIELI MTRQKLNFTS  240
ELNTICSALQ AVNLRSAEVS SVPRVQFSTA SYKNALPEIL EVLRAACLTH KLPLAQTWVT  300
CAQQGKRGSR HSDENYPYCI STIDEACFVN EPEMQDFHDA CSEHHLLRGQ GVAGKAFTTN  360
QPCFLPDIGS SAKLDYPLSH HAKIFKLKGA VAIRLRCTRT GTADFVLEFF LPTDCQALEE  420
QKEVLDSLSG TMRSVCQTLR VVTDKEMEDE AMWETNELNS FTPQGKNKAE ELSFGGNSAD  480
RRGEASWTSL AETSQQESEL AALRMHGMFS SGGQGPSLSG VQSAAEGSKA KRRTKAEKTV  540
SLQVLRQYFA GSLKDAARSL GVCPTTLKRI CRQHGITRWP SRKIKKVDHS LRKLQQIIDS  600
VHGAETSFQL NTLYKDLTNT SISSENNLSG SMTIPPTNQS NLTDFDKHQH HKSNSIVPST  660
SPSHSSCSHN SDSSPSCSGG ARKHAPQGII DLMKSGNPVK DSPIQTLQTE NTSLYEHFSV  720
HEAPTDLLQD VTEKANGGLH SSRSPSSPKQ NAEANMRVKA TFGSEKVRFR LNPKCDFQEL  780
KHEIAKRLSI VDTSSLILKY LDDDSEWVLM TCDADLQECF HVYKLADIQT IKISVHLAVS  840
PATRVTTGPT GLS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.2G309500.4.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004957563.1	0.0	protein NLP1 isoform X2
Refseq	XP_004957564.1	0.0	protein NLP1 isoform X2
TrEMBL	K3ZQN5	0.0	K3ZQN5_SETIT; Uncharacterized protein
STRING	Si028915m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Sevir.2G309500.4.p