PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G295700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family SRS
Protein Properties Length: 323aa    MW: 32828.3 Da    PI: 8.9298
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G295700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702223.25.3e-69992484153
              DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssa 94 
                         g++sCqdCGnqakkdCah+RCRtCCksrg++C+thvkstWvpaakrrerqqqlaa++++aaa++a a + r+ +++ +++ ++++ ++ss+
  Sevir.2G295700.1.p  99 GGVSCQDCGNQAKKDCAHQRCRTCCKSRGYSCSTHVKSTWVPAAKRRERQQQLAALAASAAATTAGAGPSRDPTKRPRSRLSVATPTTSSG 189
                         7899****************************************************9999999988888888888899999999******* PP

              DUF702  95 eskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                         ++++ + ++++P+evsseavfrcvr++ vd++e+e+aYqt+vsigGhvfkGiL+d G++
  Sevir.2G295700.1.p 190 DQQMVTVAERFPREVSSEAVFRCVRLGPVDQAEAEVAYQTTVSIGGHVFKGILHDVGPH 248
                         *********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.0E-64100248IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.9E-26102144IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.9E-23199247IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MAGFPLGGGG HSHSRDAPAP SVPPVHPSDA AAASFLYATR AGGGLQLWQQ HEQQHHPFYA  60
SNIIRFSDDP PGAAPSLTGA ASSSSSRGTR GGGGGSSGGG VSCQDCGNQA KKDCAHQRCR  120
TCCKSRGYSC STHVKSTWVP AAKRRERQQQ LAALAASAAA TTAGAGPSRD PTKRPRSRLS  180
VATPTTSSGD QQMVTVAERF PREVSSEAVF RCVRLGPVDQ AEAEVAYQTT VSIGGHVFKG  240
ILHDVGPHSL GNPGGSGGAI EYHFRHAGDG SPPSTAAAGD VGGGGVANVI VSSAVVMDPY  300
PTPGPYGAFP AGAAFFHGHP RQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G295700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0334110.0BT033411.1 Zea mays full-length cDNA clone ZM_BFb0154O01 mRNA, complete cds.
GenBankBT0876180.0BT087618.1 Zea mays full-length cDNA clone ZM_BFb0133L22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803795.11e-153protein SHI RELATED SEQUENCE 1-like
TrEMBLA0A2T7EV231e-161A0A2T7EV23_9POAL; Uncharacterized protein
STRINGGRMZM2G080295_P011e-148(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135435124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.12e-48Lateral root primordium (LRP) protein-related