PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.2G289800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 257aa MW: 26992 Da PI: 5.1417 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.4 | 1.2e-15 | 57 | 107 | 1 | 53 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 + ++GVr++ grWv+e+r+p ++g +r +lg++ ae Aa+a++aa+++l Sevir.2G289800.1.p 57 PVFRGVRRRGAAGRWVCEVRVPGNRG--ARLWLGTYVAAESAARAHDAAMLAL 107 579******************95554..**********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.6E-11 | 57 | 107 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.5E-13 | 58 | 126 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.3E-23 | 58 | 122 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.572 | 58 | 120 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-13 | 58 | 121 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 6.97E-17 | 59 | 122 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MDMGRLELSP SSSSTSASSS SSDHNNKAVW SPSSSSSPQP AKKRPAGRTK FRETRHPVFR 60 GVRRRGAAGR WVCEVRVPGN RGARLWLGTY VAAESAARAH DAAMLALGRG RSGPGCLNFP 120 DSAWLLAVSP PSALSGLDDA RRAALEAVAD FQRRFEAAAS GAAVDEVTSR VSAPPPLPDI 180 VSGSAATSLE QVPVKADEPA ALDVEAFEPD WFGDMDLDTY YASLAEGLLM EPPPPAAAWE 240 HGDFGDGGAD VALWSY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.2G289800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN853584 | 1e-139 | JN853584.1 Sorghum bicolor genotype CSV216R dehydration responsive element binding protein 1A (DREB1A) gene, complete cds. | |||
GenBank | JN853585 | 1e-139 | JN853585.1 Sorghum bicolor genotype M35 dehydration responsive element binding protein 1A (DREB1A) gene, complete cds. | |||
GenBank | JN853586 | 1e-139 | JN853586.1 Sorghum bicolor genotype R16 dehydration responsive element binding protein 1A (DREB1A) gene, complete cds. | |||
GenBank | JN853589 | 1e-139 | JN853589.1 Sorghum halepense dehydration responsive element binding protein 1A (DREB1A) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004957402.1 | 0.0 | dehydration-responsive element-binding protein 1H | ||||
Swissprot | A2Z388 | 2e-63 | DRE1H_ORYSI; Dehydration-responsive element-binding protein 1H | ||||
Swissprot | Q0J090 | 2e-63 | DRE1H_ORYSJ; Dehydration-responsive element-binding protein 1H | ||||
TrEMBL | K3ZW87 | 1e-180 | K3ZW87_SETIT; Uncharacterized protein | ||||
STRING | Si030869m | 1e-180 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25470.1 | 2e-24 | C-repeat/DRE binding factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.2G289800.1.p |