PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.2G280300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 269aa MW: 27910.3 Da PI: 9.8628 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.3 | 5e-20 | 122 | 171 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg++ t+eeAa+a++aa+++++g Sevir.2G280300.1.p 122 HYRGVRRRP-WGKWAAEIRDPA----KaARVWLGTYATPEEAARAYDAAARRFKG 171 69*******.**********83....36************************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.62E-18 | 121 | 181 | No hit | No description |
SuperFamily | SSF54171 | 7.19E-22 | 122 | 180 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.908 | 122 | 179 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.4E-14 | 122 | 171 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-31 | 122 | 180 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.5E-35 | 122 | 185 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-11 | 123 | 134 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-11 | 145 | 161 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MGVGVVVTGE EVDERRAWFI QVQAGTARPG GMHGDRGLVA PWWGEEEQEE RVAAVGGGFV 60 GHCYSAARAE YDAAAVAAAL TYVVCATEPP PPTTRGGGVA ASALPPAPWQ GRRHGGGGAQ 120 QHYRGVRRRP WGKWAAEIRD PAKAARVWLG TYATPEEAAR AYDAAARRFK GAKAKLNFPA 180 TAAPSQRPQQ QATAAHLPII SPSPPSSPTF AAAATVVEFP GLWQYAHILQ SSDAGHVRAV 240 ASGLPPPPPV GSGHGRDGIG GGSVGDRR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-21 | 121 | 179 | 4 | 63 | ATERF1 |
3gcc_A | 4e-21 | 121 | 179 | 4 | 63 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.2G280300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004957315.1 | 0.0 | ethylene-responsive transcription factor 4 | ||||
TrEMBL | K3ZW29 | 0.0 | K3ZW29_SETIT; Uncharacterized protein | ||||
STRING | Si030810m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16442 | 10 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33710.1 | 2e-13 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.2G280300.1.p |